Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G018770 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.1e-89 333.2 157 100.0
CsaV3_UNG070590 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.0e-68 260.4 122 99.2
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 4.2e-65 251.5 127 92.9
CsaV3_UNG139080 Cucumis sativus L. HOM05D005821 ORTHO05D006649 4.6e-64 248.1 118 99.2
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 8.7e-63 243.8 119 96.6
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 4.8e-61 238.0 119 95.0
CsaV3_7G023670 Cucumis sativus L. HOM05D005821 ORTHO05D006649 4.8e-61 238.0 127 89.0
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 3.8e-58 228.4 119 87.4
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 2.8e-53 212.2 119 80.7
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 8.2e-53 210.7 119 79.8
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 1.8e-52 209.5 119 79.8
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 1.8e-52 209.5 119 79.0
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 1.8e-52 209.5 119 81.5
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 1.8e-52 209.5 117 82.1
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 3.1e-52 208.8 119 79.0
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 4.1e-52 208.4 119 79.0
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 9.1e-52 207.2 119 77.3
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 1.2e-51 206.8 119 79.0
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 1.5e-51 206.5 117 78.6
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 5.9e-51 204.5 117 78.6
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 7.7e-51 204.1 119 79.0
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 7.7e-51 204.1 119 79.0
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 2.2e-50 202.6 119 78.2
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 2.9e-50 202.2 119 76.5
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 2.9e-50 202.2 117 79.5
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 3.8e-50 201.8 117 77.8
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 5.0e-50 201.4 117 76.1
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 5.0e-50 201.4 117 77.8
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 6.5e-50 201.1 119 76.5
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 6.5e-50 201.1 119 76.5
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 6.5e-50 201.1 119 76.5
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 6.5e-50 201.1 119 79.0
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 8.5e-50 200.7 119 77.3
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 1.4e-49 199.9 133 70.7
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 1.4e-49 199.9 117 76.9
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 1.4e-49 199.9 119 78.2
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 2.5e-49 199.1 119 78.2
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 2.5e-49 199.1 119 78.2
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 2.5e-49 199.1 119 75.6
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 3.2e-49 198.7 117 77.8
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 3.2e-49 198.7 117 76.9
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 4.2e-49 198.4 117 76.9
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 7.2e-49 197.6 117 76.1
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 7.2e-49 197.6 117 77.8
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 1.2e-48 196.8 135 65.9
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 1.2e-48 196.8 135 65.9
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 1.6e-48 196.4 119 74.8
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 1.6e-48 196.4 119 77.3
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 1.6e-48 196.4 119 75.6
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 1.6e-48 196.4 119 73.9
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 2.1e-48 196.1 119 75.6
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 2.7e-48 195.7 117 73.5
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 2.7e-48 195.7 134 67.2
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 2.7e-48 195.7 117 73.5
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 3.6e-48 195.3 119 73.9
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 4.6e-48 194.9 119 73.1
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 4.6e-48 194.9 119 73.1
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 4.6e-48 194.9 119 73.1
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 6.1e-48 194.5 119 73.1
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 6.1e-48 194.5 119 73.9
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 1.0e-47 193.7 108 79.6
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.0e-47 193.7 110 78.2
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 1.0e-47 193.7 119 74.8
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 1.4e-47 193.4 110 79.1
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 1.8e-47 193.0 116 74.1
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 2.3e-47 192.6 109 78.0
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 2.3e-47 192.6 119 74.8
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 3.9e-47 191.8 125 72.0
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 3.9e-47 191.8 117 76.1
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 3.9e-47 191.8 115 73.0
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 6.7e-47 191.0 107 80.4
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 6.7e-47 191.0 118 75.4
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 6.7e-47 191.0 119 72.3
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 8.8e-47 190.7 110 77.3
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 8.8e-47 190.7 125 68.0
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 8.8e-47 190.7 119 75.6
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 1.1e-46 190.3 120 75.8
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 1.1e-46 190.3 117 70.1
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 1.5e-46 189.9 115 73.9
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 1.5e-46 189.9 119 72.3
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 1.5e-46 189.9 115 72.2
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 1.5e-46 189.9 115 73.0
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 2.0e-46 189.5 119 72.3
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 2.0e-46 189.5 119 69.7
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 2.0e-46 189.5 115 73.9
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 2.0e-46 189.5 119 73.1
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 2.6e-46 189.1 119 70.6
CsaV3_UNG069570 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.6e-46 189.1 92 98.9
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 2.6e-46 189.1 115 73.0
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 4.4e-46 188.3 116 73.3
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 4.4e-46 188.3 117 74.4
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 3.7e-45 185.3 116 72.4
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 3.7e-45 185.3 115 71.3
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 1.4e-44 183.3 121 72.7
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 4.1e-44 181.8 157 56.7
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 9.1e-44 180.6 117 70.1
MSTRG.28231 Avicennia marina HOM05D005821 ORTHO05D006649 1.0e-42 177.2 111 73.9
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 2.9e-42 175.6 155 56.8
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 6.5e-42 174.5 127 63.0
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 2.1e-40 169.5 101 75.2
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 2.7e-40 169.1 171 50.3
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 1.4e-39 166.8 116 64.7
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 2.3e-39 166.0 113 70.8
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 6.7e-39 164.5 119 62.2
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 4.4e-38 161.8 122 63.1
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 1.4e-36 156.8 117 59.0
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 7.0e-36 154.5 75 93.3
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 1.0e-34 150.6 122 54.9
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 6.5e-34 147.9 113 63.7
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 1.1e-33 147.1 120 54.2
CsaV3_UNG082640 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.7e-32 142.5 67 97.0
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 1.0e-31 140.6 122 47.5
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 2.0e-30 136.3 117 59.0
BcaC07g41755 Brassica carinata HOM05D001218 ORTHO05D003142 3.3e-30 135.6 93 68.8
SMO011G0016 Selaginella moellendorffii HOM05D005821 ORTHO05D006649 2.8e-29 132.5 123 48.0
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 2.8e-29 132.5 74 78.4
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.4e-28 130.2 105 60.0
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 9.1e-28 127.5 85 65.9
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 3.0e-23 112.5 67 70.1
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 5.2e-23 111.7 73 61.6
CsaV3_4G038020 Cucumis sativus L. HOM05D005821 ORTHO05D006649 7.0e-20 101.3 48 97.9
CsaV3_UNG040220 Cucumis sativus L. HOM05D005821 ORTHO05D006649 7.0e-20 101.3 48 97.9
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 1.5e-17 93.6 85 51.8
COL.COLO4_12763 Corchorus olitorius HOM05D005821 ORTHO05D006649 1.7e-13 80.1 43 76.7
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.8e-12 76.6 33 100.0
SGA_v2.0_scaffold63G21843 Striga asiatica HOM05D002903 ORTHO05D003066 2.3e-10 69.7 46 71.7
PRCOL_00004349 Prasinoderma coloniale HOM05D005821 ORTHO05D006649 2.9e-10 69.3 152 27.0
BcaC05g29489 Brassica carinata HOM05D005821 ORTHO05D006649 8.0e-08 61.2 32 87.5


User provided reference genes

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