Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 2.1e-228 795.4 425 100.0
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 2.2e-225 785.4 425 98.6
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 8.3e-217 756.9 426 95.1
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 3.3e-197 691.8 423 89.4
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 1.9e-189 666.0 421 86.0
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 3.3e-157 558.9 430 74.0
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 6.3e-156 554.7 420 73.8
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 8.2e-156 554.3 426 74.2
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.2e-154 550.4 426 72.8
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 2.0e-154 549.7 423 74.5
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 2.0e-154 549.7 427 71.4
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 2.6e-154 549.3 417 73.9
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.8e-153 545.4 423 72.8
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 8.5e-153 544.3 423 73.8
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.4e-152 543.5 423 73.0
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.4e-152 543.5 426 71.8
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.9e-152 543.1 424 72.9
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 1.9e-152 543.1 423 73.3
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 9.4e-152 540.8 412 74.3
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.6e-151 540.0 423 73.0
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 2.1e-151 539.7 430 71.6
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 2.7e-151 539.3 420 74.0
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 4.6e-151 538.5 422 72.7
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 7.9e-151 537.7 417 71.9
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.8e-150 536.6 430 72.1
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 3.9e-150 535.4 430 71.4
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 1.1e-149 533.9 430 71.2
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 8.2e-148 527.7 449 69.3
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 3.1e-147 525.8 423 70.2
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 9.1e-147 524.2 417 73.6
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 9.1e-147 524.2 422 70.6
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 2.6e-146 522.7 419 72.1
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 2.6e-146 522.7 413 72.6
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 1.1e-144 517.3 421 69.4
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 9.4e-144 514.2 427 71.9
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 9.4e-144 514.2 468 65.6
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 9.4e-144 514.2 443 69.1
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.1e-143 513.1 430 70.2
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.6e-141 506.1 427 69.1
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 2.4e-139 499.6 432 67.4
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 9.1e-139 497.7 423 66.4
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 3.4e-138 495.7 426 69.7
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.5e-138 495.4 423 68.1
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 5.0e-137 491.9 434 66.8
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 5.5e-136 488.4 428 68.5
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 7.2e-136 488.0 427 68.9
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 2.1e-135 486.5 372 75.3
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 2.7e-135 486.1 423 67.1
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 8.0e-135 484.6 455 63.5
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 2.3e-134 483.0 407 68.8
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 3.0e-134 482.6 415 68.9
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 8.8e-134 481.1 407 68.6
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.5e-133 480.3 426 66.7
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 3.3e-133 479.2 418 68.2
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 2.2e-132 476.5 432 66.7
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 4.8e-132 475.3 423 66.0
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 3.1e-131 472.6 420 66.9
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 8.5e-129 464.5 424 64.9
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.5e-128 463.8 374 71.4
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 3.2e-128 462.6 419 66.1
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 4.2e-128 462.2 412 66.3
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 7.2e-128 461.5 374 71.4
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.0e-126 457.6 427 64.6
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 2.3e-126 456.4 500 58.6
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 6.7e-126 454.9 405 66.2
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 2.6e-125 453.0 418 64.4
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.7e-124 450.3 434 64.7
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.2e-124 449.9 408 64.0
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 2.4e-123 446.4 411 65.2
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 2.7e-122 443.0 416 64.7
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 5.9e-122 441.8 436 60.3
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 6.5e-121 438.3 418 62.0
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 8.5e-121 438.0 405 64.4
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.2e-119 434.1 414 61.8
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.7e-119 433.0 414 61.6
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 8.0e-119 431.4 415 63.6
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.5e-117 427.2 416 63.5
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 2.6e-117 426.4 425 60.9
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 5.7e-117 425.2 414 62.6
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 5.7e-117 425.2 422 62.3
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.2e-116 423.3 399 62.4
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 8.3e-116 421.4 431 60.8
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.4e-115 419.9 282 78.7
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 4.1e-115 419.1 441 58.3
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 5.4e-115 418.7 416 62.3
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 7.0e-115 418.3 373 65.1
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.6e-114 417.2 421 62.2
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 5.9e-114 415.2 399 61.9
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 3.8e-113 412.5 421 59.4
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 3.3e-112 409.5 462 57.1
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 3.3e-112 409.5 431 58.9
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 7.2e-112 408.3 426 58.5
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.6e-111 407.1 421 60.8
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 2.8e-111 406.4 391 60.6
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.0e-110 404.4 425 60.0
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 2.6e-109 399.8 389 61.2
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 2.6e-109 399.8 389 61.2
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.1e-107 394.4 414 58.5
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.6e-106 390.6 414 58.2
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 2.3e-105 386.7 426 58.2
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 6.8e-102 375.2 310 67.7
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.5e-101 374.0 348 62.6
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 5.8e-101 372.1 411 56.2
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 1.7e-97 360.5 466 51.9
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 8.6e-97 358.2 295 71.9
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 1.1e-94 351.3 414 53.6
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 8.9e-94 348.2 395 56.2
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.6e-93 346.7 432 54.6
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 6.4e-92 342.0 431 50.6
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 1.0e-89 334.7 409 53.5
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 4.3e-88 329.3 261 70.1
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 7.3e-88 328.6 303 67.0
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 7.8e-82 308.5 322 60.6
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 4.3e-80 302.8 274 67.2
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 6.2e-79 298.9 268 67.9
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 1.4e-78 297.7 261 68.6
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 3.2e-75 286.6 350 51.4
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 6.6e-73 278.9 191 77.5
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 8.1e-71 271.9 320 54.1
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 1.5e-69 267.7 267 63.3
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 2.0e-69 267.3 397 47.4
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.8e-68 263.1 339 52.5
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 9.3e-67 258.5 275 60.7
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 9.3e-67 258.5 424 45.0
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 1.2e-66 258.1 270 61.5
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 2.1e-66 257.3 281 60.5
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 6.6e-65 252.3 271 60.1
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 2.9e-60 236.9 256 53.5
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.9e-59 234.2 436 41.1
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.3e-55 221.5 266 55.6
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 6.2e-55 219.2 135 81.5
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 8.1e-55 218.8 136 80.9
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 1.1e-54 218.4 265 55.5
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.5e-53 214.5 427 40.5
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 2.3e-49 200.7 197 63.5
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 1.1e-46 191.8 182 60.4
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 2.4e-46 190.7 177 65.0
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 4.5e-45 186.4 130 74.6
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 1.7e-44 184.5 410 40.2
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.0e-41 175.3 144 61.8
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 7.4e-40 169.1 499 33.5
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.7e-36 157.9 161 57.1
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 1.8e-30 137.9 147 53.1
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 4.1e-22 110.2 130 53.8
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 2.3e-17 94.4 186 36.0
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 2.6e-16 90.9 231 39.8
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 2.2e-07 61.2 53 54.7
SEGI_11287 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 1.4e-06 58.5 51 56.9
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 1.8e-06 58.2 108 38.9


User provided reference genes

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