Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G018050 Cucumis sativus L. HOM05D007341 ORTHO05D009075 9.2e-74 280.4 172 100.0
MELO3C019561.2 Cucumis melo HOM05D007341 ORTHO05D009075 3.9e-72 275.0 172 92.4
Sed0003722 Sechium edule HOM05D007341 ORTHO05D009075 1.5e-60 236.5 173 85.5
ClCG05G010440 Citrullus lanatus HOM05D007341 ORTHO05D009075 1.2e-52 210.3 156 85.9
CiPaw.01G092200 Carya illinoinensis HOM05D007341 ORTHO05D009075 1.5e-47 193.4 94 93.6
Haze_16246 Corylus avellana HOM05D007341 ORTHO05D009075 3.3e-47 192.2 94 92.6
Cfa002160 Carpinus fangiana HOM05D007341 ORTHO05D009075 9.6e-47 190.7 94 91.5
QL05p085130 Quercus lobata HOM05D007341 ORTHO05D009075 9.6e-47 190.7 93 92.5
Prupe.3G028000 Prunus persica HOM05D007341 ORTHO05D009075 1.6e-46 189.9 94 92.6
GSVIVG01029444001 Vitis vinifera HOM05D007341 ORTHO05D009075 1.6e-46 189.9 94 93.6
MD09G1169800 Malus domestica HOM05D007341 ORTHO05D009075 4.0e-45 185.3 94 90.4
TWI12G0959 Tripterygium wilfordii HOM05D007341 ORTHO05D009075 4.0e-45 185.3 94 90.4
RcHm_v2.0_Chr2g0148351 Rosa chinensis HOM05D007341 ORTHO05D009075 6.9e-45 184.5 94 89.4
Ciclev10029418m.g Citrus clementina HOM05D007341 ORTHO05D009075 1.5e-44 183.3 94 88.3
FvH4_6g36350 Fragaria vesca HOM05D007341 ORTHO05D009075 1.5e-44 183.3 94 88.3
FAN02G2832 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.5e-44 183.3 94 88.3
Sabra07G0002700 Salix brachista HOM05D007341 ORTHO05D009075 5.8e-44 181.4 97 89.7
Duzib235G0177 Durio zibethinus HOM05D007341 ORTHO05D009075 7.6e-44 181.0 94 88.3
FAN09G2851 Fragaria x ananassa HOM05D007341 ORTHO05D009075 7.6e-44 181.0 94 87.2
Dinv20313 Davidia involucrata HOM05D007341 ORTHO05D009075 1.3e-43 180.3 94 89.4
Gohir.A05G116700 Gossypium hirsutum HOM05D007341 ORTHO05D009075 1.3e-43 180.3 94 87.2
Gorai.009G121500 Gossypium raimondii HOM05D007341 ORTHO05D009075 1.3e-43 180.3 94 87.2
Potri.007G003600 Populus trichocarpa HOM05D007341 ORTHO05D009075 1.3e-43 180.3 97 89.7
Gohir.D05G117600 Gossypium hirsutum HOM05D007341 ORTHO05D009075 2.2e-43 179.5 94 86.2
CSS0015626 Camellia sinensis var. sinensis HOM05D007341 ORTHO05D009075 2.9e-43 179.1 95 87.4
Cc06_g16890 Coffea canephora HOM05D007341 ORTHO05D009075 4.9e-43 178.3 97 84.5
Eucgr.F04060 Eucalyptus grandis HOM05D007341 ORTHO05D009075 4.9e-43 178.3 94 87.2
HanXRQChr03g0072101 Helianthus annuus HOM05D007341 ORTHO05D009075 2.4e-42 176.0 96 85.4
Thecc.06G049400 Theobroma cacao HOM05D007341 ORTHO05D009075 4.2e-42 175.3 94 86.2
CANSAT01G1666 Cannabis sativa HOM05D007341 ORTHO05D009075 7.1e-42 174.5 94 81.9
Lsat_1_v5_gn_9_114620 Lactuca sativa HOM05D007341 ORTHO05D009075 7.1e-42 174.5 96 84.4
Nitab4.5_0000349g0220 Nicotiana tabacum HOM05D007341 ORTHO05D009075 1.2e-41 173.7 95 83.2
TAR636G1203 Trochodendron aralioides HOM05D007341 ORTHO05D009075 1.6e-41 173.3 94 86.2
ECA240G2002 Erigeron canadensis HOM05D007341 ORTHO05D009075 2.1e-41 172.9 96 83.3
Hma1.2p1_0422F.1_g150100 Hydrangea macrophylla HOM05D007341 ORTHO05D009075 2.1e-41 172.9 94 84.0
PGR102G3137 Punica granatum HOM05D007341 ORTHO05D009075 4.6e-41 171.8 94 84.0
DCAR_027600 Daucus carota HOM05D007341 ORTHO05D009075 6.0e-41 171.4 94 80.9
Glyma.15G000400 Glycine max HOM05D007341 ORTHO05D009075 7.9e-41 171.0 88 87.5
PGSC0003DMG400019203 Solanum tuberosum HOM05D007341 ORTHO05D009075 7.9e-41 171.0 95 81.1
THA.LOC104808109 Tarenaya hassleriana HOM05D007341 ORTHO05D009075 7.9e-41 171.0 95 83.2
Solyc10g086470.2 Solanum lycopersicum HOM05D007341 ORTHO05D009075 1.3e-40 170.2 95 80.0
Sopen10g035850 Solanum pennellii HOM05D007341 ORTHO05D009075 1.3e-40 170.2 95 80.0
Phvul.005G082000 Phaseolus vulgaris HOM05D007341 ORTHO05D009075 3.3e-39 165.6 88 84.1
MSTRG.26115 Avicennia marina HOM05D007341 ORTHO05D009075 7.4e-39 164.5 96 82.3
Medtr6g004140 Medicago truncatula HOM05D007341 ORTHO05D009075 2.8e-38 162.5 94 80.9
unitig_748.g7237 Utricularia gibba HOM05D007341 ORTHO05D009075 4.8e-38 161.8 96 79.2
Migut.K00075 Erythranthe guttata HOM05D007341 ORTHO05D009075 3.1e-37 159.1 95 78.9
AUR62001305 Chenopodium quinoa HOM05D007341 ORTHO05D009075 5.3e-37 158.3 97 78.4
Aqoxy7G02561 Aquilegia oxysepala HOM05D007341 ORTHO05D009075 6.9e-37 157.9 94 78.7
BcaC08g45393 Brassica carinata HOM05D007341 ORTHO05D009075 6.9e-37 157.9 94 80.9
A07p27380 Brassica napus HOM05D007341 ORTHO05D009075 6.9e-37 157.9 94 80.9
C06p30240 Brassica napus HOM05D007341 ORTHO05D009075 6.9e-37 157.9 94 80.9
BolC6t38187H Brassica oleracea HOM05D007341 ORTHO05D009075 6.9e-37 157.9 94 80.9
BraA07t30379Z Brassica rapa HOM05D007341 ORTHO05D009075 6.9e-37 157.9 94 80.9
AUR62025687 Chenopodium quinoa HOM05D007341 ORTHO05D009075 6.9e-37 157.9 97 77.3
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 6.9e-37 157.9 94 80.9
Lalb_Chr24g0392671 Lupinus albus HOM05D007341 ORTHO05D009075 6.9e-37 157.9 92 79.3
CARHR072660 Cardamine hirsuta HOM05D007341 ORTHO05D009075 1.5e-36 156.8 94 79.8
BcaB02g07190 Brassica carinata HOM05D007341 ORTHO05D009075 3.4e-36 155.6 94 79.8
Thhalv10019269m.g Eutrema salsugineum HOM05D007341 ORTHO05D009075 3.4e-36 155.6 94 79.8
AL2G39450 Arabidopsis lyrata HOM05D007341 ORTHO05D009075 4.5e-36 155.2 94 79.8
AT1G78995 Arabidopsis thaliana HOM05D007341 ORTHO05D009075 5.8e-36 154.8 94 78.7
Carub.0002s2586 Capsella rubella HOM05D007341 ORTHO05D009075 5.8e-36 154.8 94 78.7
CDE05G1356 Ceratophyllum demersum HOM05D007341 ORTHO05D009075 5.8e-36 154.8 94 78.7
Sp5g34040 Schrenkiella parvula HOM05D007341 ORTHO05D009075 7.6e-36 154.5 94 78.7
EL10Ac7g18105 Beta vulgaris HOM05D007341 ORTHO05D009075 2.2e-35 152.9 96 75.0
Actinidia38822 Actinidia chinensis HOM05D007341 ORTHO05D009075 4.9e-35 151.8 105 75.2
Mapoly0061s0126 Marchantia polymorpha HOM05D007341 ORTHO05D009075 2.5e-34 149.4 94 73.4
Pp3c15_22740 Physcomitrium patens HOM05D007341 ORTHO05D009075 3.2e-34 149.1 94 73.4
HPP92_026441 Vanilla planifolia HOM05D007341 ORTHO05D009075 9.3e-34 147.5 94 73.4
Hund18551 Selenicereus undatus HOM05D007341 ORTHO05D009075 3.5e-33 145.6 96 74.0
SGA_v2.0_scaffold94G28462 Striga asiatica HOM05D007341 ORTHO05D009075 1.0e-32 144.1 95 73.7
Zm00001eb227230 Zea mays HOM05D007341 ORTHO05D009075 2.3e-32 142.9 94 70.2
Cpa.g.sc4293.1 Carica papaya HOM05D007341 ORTHO05D009075 3.0e-32 142.5 74 86.5
ATR0626G096 Amborella trichopoda HOM05D007341 ORTHO05D009075 5.1e-32 141.7 94 73.4
VMungo1080G1509 Vigna mungo HOM05D007341 ORTHO05D009075 7.4e-31 137.9 74 83.8
FAN14G2925 Fragaria x ananassa HOM05D007341 ORTHO05D009075 9.7e-31 137.5 94 71.3
FAN14G4935 Fragaria x ananassa HOM05D007341 ORTHO05D009075 9.7e-31 137.5 94 71.3
Nn8g41280 Nelumbo nucifera HOM05D007341 ORTHO05D009075 1.3e-30 137.1 74 86.5
PSO063G2737 Papaver somniferum HOM05D007341 ORTHO05D009075 8.2e-30 134.4 90 71.1
PSO170G4447 Papaver somniferum HOM05D007341 ORTHO05D009075 1.4e-29 133.7 90 71.1
DCAR_011722 Daucus carota HOM05D007341 ORTHO05D009075 3.1e-29 132.5 92 64.1
SMO232G0085 Selaginella moellendorffii HOM05D007341 ORTHO05D009075 4.1e-29 132.1 94 67.0
Nitab4.5_0001911g0010 Nicotiana tabacum HOM05D007341 ORTHO05D009075 4.5e-28 128.6 95 67.4
Sc16g0003760 Simmondsia chinensis HOM05D007341 ORTHO05D009075 1.1e-26 124.0 79 78.5
Os06g0704200 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 3.2e-26 122.5 92 65.2
Sabra14G0002900 Salix brachista HOM05D007341 ORTHO05D009075 2.1e-25 119.8 89 67.4
C02p36120 Brassica napus HOM05D007341 ORTHO05D009075 9.7e-23 110.9 66 77.3
vmacro18722 Vaccinium macrocarpon HOM05D007341 ORTHO05D009075 5.3e-21 105.1 90 62.2
Rhsim08G0252300 Rhododendron simsii HOM05D000912 ORTHO05D009075 9.1e-21 104.4 63 84.1
Peaxi162Scf00330g00029 Petunia axillaris HOM05D007341 ORTHO05D009075 1.2e-20 104.0 107 57.0
Manes.06G177800 Manihot esculenta HOM05D007341 ORTHO05D009075 2.0e-20 103.2 61 75.4
Cre01.g000800 Chlamydomonas reinhardtii HOM05D007341 ORTHO05D009075 1.0e-19 100.9 90 50.0
Oeu004021.1 Olea europaea HOM05D007341 ORTHO05D009075 6.5e-19 98.2 61 78.7
Aa31LG4G1990 Aethionema arabicum HOM05D007341 ORTHO05D009075 1.4e-18 97.1 60 78.3
Psat6g000680 Pisum sativum HOM05D007341 ORTHO05D009075 9.4e-18 94.4 60 76.7
Lj9A544T49 Lonicera japonica HOM05D007341 ORTHO05D009075 2.1e-17 93.2 66 74.2
Os02g0138100 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 3.6e-17 92.4 82 57.3
MCO04G269 Micromonas commoda HOM05D007341 ORTHO05D009075 4.7e-17 92.0 84 46.4
SalBow1G8719 Salvia bowleyana HOM05D007341 ORTHO05D009075 2.3e-16 89.7 85 56.5
SalBow1G7986 Salvia bowleyana HOM05D007341 ORTHO05D009075 2.0e-15 86.7 62 67.7
Ah.08g218010 Amaranthus hybridus HOM05D007341 ORTHO05D009075 6.3e-14 81.6 100 49.0
AagrBONN_evm.TU.Sc2ySwM_368.1307 Anthoceros agrestis HOM05D007341 ORTHO05D009075 1.1e-13 80.9 60 66.7
MBI13_g34919_MAGBIO Magnolia biondii HOM05D007341 ORTHO05D009075 1.8e-13 80.1 54 77.8
PRCOL_00000561 Prasinoderma coloniale HOM05D007341 ORTHO05D009075 4.5e-12 75.5 87 42.5
Zm00001eb231900 Zea mays HOM05D007341 ORTHO05D009075 6.1e-09 65.1 77 45.5


User provided reference genes

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