Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1471.1 750 100.0
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1445.6 750 98.0
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1437.9 750 96.9
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1401.7 750 92.7
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1393.6 750 93.1
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1301.6 752 85.6
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1293.9 750 84.3
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1292.3 752 84.6
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1291.6 753 86.6
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1290.0 753 86.9
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1290.0 751 84.4
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1284.2 751 84.6
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1283.1 748 83.7
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1282.7 751 83.6
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1281.9 751 83.6
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1280.8 750 83.9
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1278.1 755 83.8
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1275.8 750 83.9
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1275.8 750 85.7
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1274.6 750 83.7
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1270.8 750 83.1
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1270.0 748 83.4
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1267.7 750 83.1
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1266.1 748 82.2
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1266.1 750 82.5
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1265.4 750 83.3
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1265.4 750 83.3
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1263.8 749 82.8
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1263.8 750 83.1
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1262.3 750 83.6
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1261.5 751 82.3
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1261.1 750 82.7
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1260.4 750 82.8
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1257.3 750 81.7
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1256.9 751 82.3
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1256.5 749 82.4
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1255.7 748 82.8
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1255.0 749 82.0
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 762 82.0
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1253.4 751 83.6
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1252.3 748 83.0
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1252.3 750 84.5
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1251.9 750 83.7
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 750 82.7
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 690 87.5
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1250.7 748 82.5
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1250.0 746 83.1
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1249.2 749 81.8
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1249.2 751 81.6
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1248.8 750 83.3
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1248.8 748 82.5
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1248.4 750 83.9
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1247.3 783 79.4
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1246.9 749 82.0
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1246.9 750 84.1
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1246.5 750 83.9
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1246.5 751 81.6
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 805 77.6
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1241.9 750 80.7
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1241.1 749 81.2
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1241.1 752 81.4
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1241.1 749 81.2
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 760 82.1
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1240.3 760 81.6
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1240.3 750 80.9
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1239.6 750 81.3
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1239.2 751 81.8
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1237.2 751 80.6
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1234.6 752 81.5
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1230.7 750 80.0
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 750 79.7
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1217.2 752 79.0
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1214.1 752 81.0
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1212.6 750 80.4
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1212.2 753 80.2
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1211.1 845 72.5
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1207.2 752 79.1
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1206.8 751 79.9
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1206.8 755 79.3
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1205.3 745 80.8
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1204.5 751 80.4
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1203.3 753 79.3
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1202.6 749 78.4
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1201.4 750 78.7
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1201.0 690 83.8
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1200.3 750 78.4
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1198.0 750 78.4
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1197.6 750 78.4
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1197.6 744 78.6
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 750 78.3
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1196.0 691 83.1
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1195.3 750 77.7
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1194.5 750 77.9
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1193.3 750 78.3
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1191.8 750 78.0
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1191.8 750 78.0
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1191.8 750 78.0
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1188.7 754 79.4
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1185.6 691 82.3
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1183.3 658 87.4
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1182.2 756 77.4
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1181.4 783 75.0
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1176.8 734 77.8
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1166.8 750 76.7
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1164.8 751 77.2
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1160.6 762 75.9
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1152.9 658 85.1
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1150.2 658 84.8
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1145.6 668 84.3
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1142.9 750 76.7
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1136.7 744 74.7
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1134.4 757 75.8
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1124.0 658 84.3
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1116.3 751 75.8
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1105.5 1056 57.3
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1091.6 762 71.9
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 1.3e-310 1069.3 626 84.0
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 9.9e-306 1053.1 750 72.4
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 6.4e-289 997.3 677 69.9
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 7.9e-287 990.3 688 70.2
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.9e-286 988.0 688 70.5
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.9e-286 988.0 688 70.5
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.3e-285 984.9 688 70.3
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 4.3e-285 984.6 692 68.5
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 3.4e-282 974.9 683 68.8
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 4.8e-260 901.4 593 75.5
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 2.5e-256 889.0 593 75.0
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 5.7e-253 877.9 679 62.7
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 6.5e-233 811.2 679 58.6
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.7e-226 789.3 682 58.9
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 9.8e-213 744.2 676 56.2
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 5.6e-208 728.4 679 60.2
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 1.2e-199 700.7 678 52.5
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 8.1e-175 618.2 709 46.8
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 1.3e-164 584.3 361 77.3
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.7e-156 557.4 305 87.9
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 2.9e-156 556.6 326 85.3
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 5.7e-144 515.8 303 89.8
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 7.0e-134 482.3 301 80.1
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 4.0e-129 466.5 309 74.8
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 3.4e-120 436.8 294 71.8
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 4.7e-114 416.4 236 83.5
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 3.7e-103 380.2 241 77.6
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.0e-100 370.5 298 66.1
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 4.7e-98 363.2 298 64.8
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 4.7e-98 363.2 219 80.4
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 5.4e-86 323.2 227 72.2
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 8.1e-74 282.7 172 78.5
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 9.3e-70 269.2 366 41.8
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 3.1e-65 254.2 126 94.4
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 3.4e-64 250.8 396 43.7
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.4e-62 245.4 144 80.6
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 2.7e-61 241.1 260 53.5
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 3.7e-58 230.7 114 93.9
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.1e-45 188.3 117 78.6
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 2.3e-44 184.9 144 68.1
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.1e-41 176.0 122 71.3
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.0e-40 171.8 144 61.1
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 7.7e-40 169.9 104 72.1
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 3.0e-36 157.9 85 85.9
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 3.8e-31 141.0 142 50.7
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 7.2e-30 136.7 83 80.7
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 4.7e-29 134.0 139 56.1
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.4e-28 132.5 105 61.9
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 2.8e-26 124.8 145 53.1
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 8.2e-26 123.2 61 91.8
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.2e-24 119.4 99 65.7
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 5.0e-23 114.0 221 30.8
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.3e-18 99.4 144 45.8
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 7.7e-16 90.1 56 78.6
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.7e-15 89.0 50 80.0
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 8.8e-12 76.6 42 90.5
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.5e-11 75.9 42 83.3
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 1.7e-10 72.4 38 92.1
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 5.5e-06 57.4 32 78.1


User provided reference genes

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