Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G017850 Cucumis sativus L. HOM05D007545 ORTHO05D009579 8.1e-106 388.3 198 100.0
MELO3C032020.2 Cucumis melo HOM05D007545 ORTHO05D009579 4.7e-69 266.2 148 92.6
Sed0004069 Sechium edule HOM05D007545 ORTHO05D009579 1.5e-46 191.4 147 68.7
Sed0020460 Sechium edule HOM05D007545 ORTHO05D009579 7.2e-46 189.1 147 68.0
TAR371G0190 Trochodendron aralioides HOM05D007545 ORTHO05D009579 1.2e-35 155.2 147 58.5
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 1.6e-32 144.8 115 62.6
Cfa007791 Carpinus fangiana HOM05D007545 ORTHO05D009579 2.0e-32 144.4 150 54.7
Haze_14281 Corylus avellana HOM05D007545 ORTHO05D009579 4.6e-32 143.3 151 54.3
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 4.6e-32 143.3 156 50.6
Prupe.3G166000 Prunus persica HOM05D007545 ORTHO05D009579 7.8e-32 142.5 130 57.7
Lsat_1_v5_gn_2_68461 Lactuca sativa HOM05D007545 ORTHO05D009579 1.0e-31 142.1 129 58.1
Hund13089 Selenicereus undatus HOM05D007545 ORTHO05D009579 1.0e-31 142.1 151 50.3
SGA_v2.0_scaffold45G17151 Striga asiatica HOM05D007545 ORTHO05D009579 2.3e-31 141.0 136 53.7
Gohir.D08G049200 Gossypium hirsutum HOM05D007545 ORTHO05D009579 3.0e-31 140.6 145 54.5
MD17G1268500 Malus domestica HOM05D007545 ORTHO05D009579 3.0e-31 140.6 167 49.7
CANSAT64G1149 Cannabis sativa HOM05D007545 ORTHO05D009579 3.9e-31 140.2 138 58.7
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 5.0e-31 139.8 113 61.9
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 6.6e-31 139.4 149 50.3
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 8.6e-31 139.0 149 50.3
Gorai.004G048700 Gossypium raimondii HOM05D007545 ORTHO05D009579 1.1e-30 138.7 128 57.8
SalBow5G0095 Salvia bowleyana HOM05D007545 ORTHO05D009579 2.1e-29 134.4 127 55.1
Migut.K00924 Erythranthe guttata HOM05D007545 ORTHO05D009579 5.2e-28 129.8 119 59.7
CiPaw.03G073600 Carya illinoinensis HOM05D007545 ORTHO05D009579 1.2e-27 128.6 154 49.4
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 2.0e-27 127.9 140 50.7
Manes.01G119900 Manihot esculenta HOM05D007545 ORTHO05D009579 3.4e-27 127.1 113 58.4
Oeu030299.1 Olea europaea HOM05D007545 ORTHO05D009579 9.8e-27 125.6 139 48.9
BraA06t23847Z Brassica rapa HOM05D007545 ORTHO05D009579 2.9e-26 124.0 180 43.3
BolC5t29527H Brassica oleracea HOM05D007545 ORTHO05D009579 1.1e-25 122.1 168 45.2
RcHm_v2.0_Chr3g0491601 Rosa chinensis HOM05D007545 ORTHO05D009579 1.4e-25 121.7 115 58.3
A06p06360 Brassica napus HOM05D007545 ORTHO05D009579 2.4e-25 120.9 180 42.2
GSVIVG01030674001 Vitis vinifera HOM05D007545 ORTHO05D009579 2.4e-25 120.9 133 50.4
Nitab4.5_0001650g0170 Nicotiana tabacum HOM05D007545 ORTHO05D009579 3.2e-25 120.6 136 50.7
Sc14g0006910 Simmondsia chinensis HOM05D007545 ORTHO05D009579 3.2e-25 120.6 103 55.3
C05p07760 Brassica napus HOM05D007545 ORTHO05D009579 4.1e-25 120.2 204 41.7
Carub.0001s0902 Capsella rubella HOM05D007545 ORTHO05D009579 7.1e-25 119.4 151 46.4
HanXRQChr14g0457331 Helianthus annuus HOM05D007545 ORTHO05D009579 7.1e-25 119.4 115 55.7
Aqoxy3G04069 Aquilegia oxysepala HOM05D007545 ORTHO05D009579 1.6e-24 118.2 120 51.7
QL08p020033 Quercus lobata HOM05D007545 ORTHO05D009579 2.7e-24 117.5 131 52.7
ECA238G0700 Erigeron canadensis HOM05D007545 ORTHO05D009579 1.0e-23 115.5 126 49.2
THA.LOC104805633 Tarenaya hassleriana HOM05D007545 ORTHO05D009579 1.0e-23 115.5 150 46.0
AT1G09680 Arabidopsis thaliana HOM05D007545 ORTHO05D009579 1.3e-23 115.2 151 43.7
Sp1g08270 Schrenkiella parvula HOM05D001024 ORTHO05D009579 1.3e-23 115.2 153 44.4
CARHR009650 Cardamine hirsuta HOM05D007545 ORTHO05D009579 1.7e-23 114.8 150 44.7
Thhalv10007116m.g Eutrema salsugineum HOM05D007545 ORTHO05D009579 1.7e-23 114.8 148 44.6
AL1G20230 Arabidopsis lyrata HOM05D007545 ORTHO05D009579 3.0e-23 114.0 142 45.8
Potri.017G131400 Populus trichocarpa HOM05D007545 ORTHO05D009579 3.9e-23 113.6 124 49.2
Lalb_Chr10g0104281 Lupinus albus HOM05D007545 ORTHO05D009579 6.6e-23 112.8 162 44.4
Hma1.2p1_0158F.1_g070060 Hydrangea macrophylla HOM05D007545 ORTHO05D009579 8.6e-23 112.5 91 60.4
Cpa.g.sc340.2 Carica papaya HOM05D007545 ORTHO05D009579 1.5e-22 111.7 119 52.1
Eucgr.F02875 Eucalyptus grandis HOM05D007545 ORTHO05D009579 5.6e-22 109.8 115 53.0
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 9.5e-22 109.0 137 47.4
Aa31LG1G5330 Aethionema arabicum HOM05D007545 ORTHO05D009579 1.2e-21 108.6 149 44.3
FAN26G0753 Fragaria x ananassa HOM05D007545 ORTHO05D009579 4.7e-21 106.7 113 53.1
VMungo0647G0528 Vigna mungo HOM05D007545 ORTHO05D009579 6.2e-21 106.3 115 51.3
Phvul.008G237700 Phaseolus vulgaris HOM05D007545 ORTHO05D009579 1.8e-20 104.8 116 49.1
PGR004G2599 Punica granatum HOM05D007545 ORTHO05D009579 3.1e-20 104.0 150 43.3
Glyma.02G243500 Glycine max HOM05D007545 ORTHO05D009579 6.8e-20 102.8 119 47.9
FvH4_1g30171 Fragaria vesca HOM05D007545 ORTHO05D009579 1.2e-19 102.1 115 52.2
FAN19G0914 Fragaria x ananassa HOM05D007545 ORTHO05D009579 1.2e-19 102.1 115 52.2
TPR.G23654 Trifolium pratense HOM05D007545 ORTHO05D009579 2.0e-19 101.3 119 47.1
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 3.4e-19 100.5 139 43.9
Ciclev10011347m.g Citrus clementina HOM05D007545 ORTHO05D009579 6.4e-18 96.3 129 44.2
Rhsim10G0178600 Rhododendron simsii HOM05D007545 ORTHO05D009579 2.4e-17 94.4 95 52.6
Medtr5g077930 Medicago truncatula HOM05D007545 ORTHO05D009579 4.1e-17 93.6 117 42.7
Nitab4.5_0001088g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 1.1e-14 85.5 117 47.9
Atru.chr1.1983 Acer truncatum HOM05D007545 ORTHO05D009579 2.1e-13 81.3 139 38.1
ClCG05G010640 Citrullus lanatus HOM05D007545 ORTHO05D009579 2.6e-11 74.3 42 88.1
Zm00001eb080530 Zea mays HOM05D007545 ORTHO05D009579 2.9e-10 70.9 158 33.5
Gorai.007G220500 Gossypium raimondii HOM05D007545 ORTHO05D009579 1.2e-08 65.5 104 37.5
Gohir.D11G205366 Gossypium hirsutum HOM05D007545 ORTHO05D009579 2.3e-07 61.2 52 55.8
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 6.6e-07 59.7 140 29.3
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 2.5e-06 57.8 201 26.9
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 3.3e-06 57.4 216 25.9
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 3.3e-06 57.4 208 25.5
QL05p016537 Quercus lobata HOM05D007545 ORTHO05D009579 4.3e-06 57.0 45 60.0


User provided reference genes

Program Settings