Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 6.3e-166 587.4 307 100.0
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 1.7e-155 552.7 315 93.0
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 3.7e-142 508.4 315 86.0
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 5.0e-131 471.5 264 92.8
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 4.7e-113 411.8 281 77.6
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 8.1e-113 411.0 308 73.1
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 1.4e-112 410.2 308 72.7
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 1.4e-112 410.2 264 79.9
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 6.8e-112 407.9 271 78.6
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 2.6e-111 406.0 297 72.1
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 2.6e-111 406.0 299 74.2
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 3.4e-111 405.6 294 73.8
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 5.8e-111 404.8 265 79.6
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 9.9e-111 404.1 266 78.9
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 1.7e-110 403.3 275 76.4
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.7e-110 403.3 318 70.4
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 6.4e-110 401.4 264 78.4
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 6.4e-110 401.4 265 79.2
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 1.9e-109 399.8 268 78.0
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 3.2e-109 399.1 268 78.4
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 9.2e-109 397.5 264 78.4
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 9.2e-109 397.5 267 78.7
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 1.2e-108 397.1 268 76.9
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 1.2e-108 397.1 268 77.6
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 1.6e-108 396.7 301 70.1
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 4.6e-108 395.2 266 77.4
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 4.6e-108 395.2 266 78.6
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 7.8e-108 394.4 291 73.2
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.0e-107 394.0 271 77.1
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 1.3e-107 393.7 264 76.5
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 1.7e-107 393.3 270 77.8
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 1.7e-107 393.3 266 78.2
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 2.3e-107 392.9 264 76.5
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 2.3e-107 392.9 264 76.5
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 8.6e-107 391.0 295 72.2
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 1.1e-106 390.6 268 77.6
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 1.9e-106 389.8 310 68.7
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 4.3e-106 388.7 305 70.5
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 4.3e-106 388.7 265 78.1
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 5.6e-106 388.3 314 70.1
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 5.6e-106 388.3 270 73.7
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 9.6e-106 387.5 265 77.4
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 1.6e-105 386.7 266 77.1
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 2.1e-105 386.3 304 68.8
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 2.1e-105 386.3 304 68.8
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 3.6e-105 385.6 262 79.0
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 4.7e-105 385.2 266 78.2
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 6.2e-105 384.8 298 69.1
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.1e-104 384.0 265 76.6
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 1.4e-104 383.6 302 67.9
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 1.8e-104 383.3 293 72.0
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 2.4e-104 382.9 299 71.9
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.4e-103 379.0 267 75.7
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 5.8e-103 378.3 266 75.6
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 7.6e-103 377.9 265 75.1
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 9.9e-103 377.5 264 73.5
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 9.9e-103 377.5 265 75.5
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 1.3e-102 377.1 303 69.6
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 1.7e-102 376.7 305 70.8
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 2.2e-102 376.3 249 77.1
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 2.2e-102 376.3 265 75.1
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 2.9e-102 375.9 271 74.2
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 8.4e-102 374.4 309 66.7
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 8.4e-102 374.4 234 84.6
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 1.4e-101 373.6 242 78.5
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 3.2e-101 372.5 266 74.8
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 4.2e-101 372.1 264 74.6
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 2.1e-100 369.8 265 74.0
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.0e-99 367.5 271 72.7
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.0e-99 367.5 308 65.9
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 1.3e-99 367.1 270 75.6
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 2.3e-99 366.3 303 68.3
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 3.9e-99 365.5 271 73.1
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 5.1e-99 365.2 265 73.2
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 1.5e-98 363.6 270 74.4
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.9e-98 363.2 270 73.7
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.9e-98 363.2 270 73.7
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 1.9e-98 363.2 270 73.7
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 2.5e-98 362.8 266 71.8
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.5e-98 362.8 265 73.6
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 2.5e-98 362.8 265 73.6
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 7.3e-98 361.3 264 72.3
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 1.6e-97 360.1 307 67.1
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 1.6e-97 360.1 266 69.5
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.1e-97 359.8 264 72.7
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 3.6e-97 359.0 266 72.9
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 3.6e-97 359.0 291 65.6
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 6.2e-97 358.2 270 71.1
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.1e-96 357.5 309 65.0
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 5.3e-96 355.1 301 65.4
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 1.2e-95 354.0 309 64.7
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 3.5e-92 342.4 273 70.0
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 4.6e-92 342.0 265 69.4
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 2.3e-91 339.7 275 69.1
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 1.6e-89 333.6 234 75.6
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 6.9e-88 328.2 270 65.9
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 2.2e-86 323.2 210 79.0
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 1.4e-85 320.5 269 65.1
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 2.7e-84 316.2 264 64.4
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 1.8e-83 313.5 266 65.0
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.8e-80 303.5 222 72.1
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 1.6e-76 290.4 250 59.2
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 3.9e-75 285.8 264 62.1
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 1.1e-74 284.3 271 60.1
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 1.5e-71 273.9 248 58.1
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.5e-71 273.9 170 80.6
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 2.1e-68 263.5 240 58.8
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 3.6e-68 262.7 184 75.5
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 9.7e-66 254.6 171 76.0
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 4.1e-64 249.2 250 56.8
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 1.4e-56 224.2 306 45.1
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 6.5e-54 215.3 250 51.2
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 6.1e-52 208.8 175 65.7
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 6.1e-44 182.2 150 64.7
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 1.2e-42 177.9 183 55.7
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.8e-41 172.6 264 44.3
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 3.1e-24 116.7 81 71.6
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 2.5e-21 107.1 115 53.9
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 3.6e-20 103.2 85 64.7
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 1.0e-19 101.7 85 64.7
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 4.0e-19 99.8 85 64.7
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 3.2e-08 63.5 66 54.5
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 1.2e-07 61.6 66 54.5


User provided reference genes

Program Settings