Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 1.8e-98 362.8 217 100.0
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 6.6e-93 344.4 217 94.9
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 1.5e-89 333.2 216 93.5
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 2.3e-77 292.7 218 84.4
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 2.3e-77 292.7 217 83.9
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 6.4e-40 168.3 207 61.8
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 3.2e-39 166.0 206 59.2
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 2.7e-38 162.9 207 60.9
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 3.5e-38 162.5 207 63.8
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 6.0e-38 161.8 212 60.8
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.0e-38 161.8 207 62.8
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 3.0e-37 159.5 202 50.0
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.9e-37 159.1 207 62.3
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.1e-37 158.7 207 62.3
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 6.7e-37 158.3 207 62.3
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.7e-37 158.3 207 62.3
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 1.9e-36 156.8 201 45.3
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 2.8e-35 152.9 207 50.2
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 4.8e-35 152.1 205 48.8
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.2e-35 151.8 207 61.4
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 8.1e-35 151.4 207 60.9
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 1.1e-34 151.0 202 49.0
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 1.1e-34 151.0 206 60.2
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 3.1e-34 149.4 208 51.4
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.3e-34 148.7 206 47.6
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.3e-34 148.7 206 47.6
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 5.3e-34 148.7 201 61.2
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 1.5e-33 147.1 203 50.7
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 2.0e-33 146.7 207 50.2
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 4.5e-33 145.6 207 51.2
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 5.8e-33 145.2 205 52.7
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 5.8e-33 145.2 205 52.7
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 1.3e-32 144.1 200 50.0
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 1.7e-32 143.7 205 49.3
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.7e-32 143.7 205 49.3
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.8e-32 142.5 206 49.5
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 6.5e-32 141.7 202 54.0
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 1.1e-31 141.0 204 57.4
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 1.4e-31 140.6 207 49.8
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 1.9e-31 140.2 200 46.5
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 3.2e-31 139.4 199 49.2
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 4.2e-31 139.0 201 47.8
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 4.2e-31 139.0 207 58.5
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.5e-31 138.7 206 45.1
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.5e-31 138.7 206 45.1
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 7.1e-31 138.3 204 49.0
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 9.3e-31 137.9 204 50.5
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 1.2e-30 137.5 204 58.3
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.1e-30 136.7 212 41.5
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 2.7e-30 136.3 146 50.7
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 3.5e-30 136.0 214 57.5
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.3e-29 134.0 206 48.5
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 1.3e-29 134.0 201 40.3
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 2.3e-29 133.3 196 54.6
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 3.0e-29 132.9 149 49.0
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 8.7e-29 131.3 201 44.8
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 1.5e-28 130.6 196 54.1
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.5e-28 130.6 200 47.0
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 1.5e-28 130.6 201 59.7
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 2.5e-28 129.8 196 53.6
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 3.3e-28 129.4 193 47.7
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 4.3e-28 129.0 208 42.8
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 5.7e-28 128.6 207 45.9
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 9.6e-28 127.9 198 55.6
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 9.6e-28 127.9 200 46.0
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 3.7e-27 125.9 206 45.1
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.7e-27 125.9 147 49.0
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 8.2e-27 124.8 192 46.9
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 1.8e-26 123.6 191 40.8
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 2.4e-26 123.2 147 47.6
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 3.1e-26 122.9 206 45.1
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 3.1e-26 122.9 205 44.9
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 3.1e-26 122.9 192 47.9
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 5.3e-26 122.1 207 44.9
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 6.9e-26 121.7 198 53.5
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 9.0e-26 121.3 207 46.9
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 1.5e-25 120.6 209 44.5
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 2.6e-25 119.8 189 49.2
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 5.9e-25 118.6 201 44.8
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.0e-24 117.9 208 46.2
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.0e-24 117.9 208 46.2
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 1.0e-24 117.9 196 54.1
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.7e-24 117.1 206 42.2
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 2.9e-24 116.3 209 43.5
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 5.0e-24 115.5 207 43.5
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.5e-24 115.2 209 46.4
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 8.5e-24 114.8 209 45.9
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 8.5e-24 114.8 207 43.0
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 1.9e-23 113.6 201 44.8
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 2.5e-23 113.2 192 46.4
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.5e-23 113.2 207 45.4
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.2e-23 112.8 209 45.5
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.2e-23 112.5 207 44.9
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.5e-23 112.1 207 52.7
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 5.5e-23 112.1 208 38.9
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 7.2e-23 111.7 187 41.7
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 9.3e-23 111.3 207 44.9
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.6e-22 110.5 199 39.7
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 1.6e-22 110.5 200 46.5
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 2.7e-22 109.8 207 50.2
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 3.6e-22 109.4 205 40.5
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 7.9e-22 108.2 199 39.2
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 7.9e-22 108.2 200 43.5
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 7.9e-22 108.2 201 54.7
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 1.3e-21 107.5 204 40.2
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 1.1e-20 104.4 209 51.2
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 1.5e-20 104.0 198 50.0
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 1.9e-20 103.6 200 43.0
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 2.5e-20 103.2 209 36.8
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 9.7e-20 101.3 190 47.4
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 2.8e-19 99.8 209 41.6
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 4.8e-19 99.0 195 43.1
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 4.8e-19 99.0 197 40.1
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 8.2e-19 98.2 201 52.2
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.2e-19 98.2 193 47.2
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 8.2e-19 98.2 193 47.2
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.1e-18 97.8 211 42.2
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 1.1e-18 97.8 197 46.7
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 1.4e-18 97.4 191 53.4
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 1.8e-18 97.1 204 41.7
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 4.1e-18 95.9 202 40.1
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.9e-18 95.1 193 46.6
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 9.1e-18 94.7 205 36.1
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 9.1e-18 94.7 204 35.8
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 9.1e-18 94.7 197 46.2
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 1.2e-17 94.4 206 36.4
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.2e-17 94.4 204 37.3
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.0e-17 93.6 206 37.9
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.6e-17 93.2 204 36.3
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 5.9e-17 92.0 220 36.8
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 5.0e-16 89.0 203 36.5
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 8.5e-16 88.2 206 36.9
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 8.5e-16 88.2 206 35.0
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 1.4e-15 87.4 205 34.6
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 2.5e-15 86.7 196 41.3
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 4.2e-15 85.9 203 36.0
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 4.2e-15 85.9 198 34.8
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 5.5e-15 85.5 204 52.5
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 7.2e-15 85.1 204 34.3
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.6e-14 84.0 112 55.4
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 2.7e-14 83.2 198 33.8
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 2.7e-14 83.2 212 36.3
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 6.1e-14 82.0 197 37.1
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 1.0e-13 81.3 196 32.1
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 3.0e-13 79.7 196 35.2
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 3.0e-13 79.7 131 62.6
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 3.0e-13 79.7 222 49.1
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 3.9e-13 79.3 193 35.8
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 5.1e-13 79.0 203 33.5
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 8.8e-13 78.2 99 71.7
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 1.1e-12 77.8 205 40.5
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 2.0e-12 77.0 196 33.2
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 2.0e-12 77.0 216 47.7
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 3.3e-12 76.3 202 39.6
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 9.7e-12 74.7 207 39.1
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 1.3e-11 74.3 209 33.5
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.7e-11 73.9 202 31.2
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 6.3e-11 72.0 210 32.4
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 8.2e-11 71.6 198 32.3
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 8.2e-11 71.6 206 32.0
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 1.4e-10 70.9 103 42.7
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 2.4e-10 70.1 100 77.0
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 3.1e-10 69.7 213 50.2
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 4.1e-10 69.3 121 35.5
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 4.1e-10 69.3 206 44.2
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 4.1e-10 69.3 106 48.1
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 5.3e-10 68.9 129 34.9
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 9.1e-10 68.2 191 36.1
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 3.4e-09 66.2 211 32.7
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 5.9e-09 65.5 197 33.5
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 1.3e-08 64.3 208 48.1
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.7e-08 63.9 211 30.8
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 3.8e-08 62.8 208 30.8
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 5.0e-08 62.4 214 47.2
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 1.9e-07 60.5 200 30.5
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 3.2e-07 59.7 103 50.5
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 7.2e-07 58.5 85 44.7
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 1.2e-06 57.8 203 45.3
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 2.1e-06 57.0 115 39.1
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 2.1e-06 57.0 115 39.1
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 2.7e-06 56.6 83 57.8


User provided reference genes

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