Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 0.0e+00 1367.4 711 100.0
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 0.0e+00 1325.8 709 97.0
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 0.0e+00 1184.9 826 80.0
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 0.0e+00 1113.2 715 83.9
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 1.3e-291 1006.1 724 78.9
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 1.2e-199 700.7 714 56.7
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 8.8e-195 684.5 719 55.9
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 2.8e-193 679.5 716 57.0
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 1.1e-189 667.5 713 55.8
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 5.5e-189 665.2 716 53.9
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 3.0e-187 659.4 715 55.4
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 9.7e-186 654.4 714 57.0
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 1.3e-185 654.1 722 53.3
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.2e-183 647.5 723 54.6
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 7.7e-183 644.8 712 55.2
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.5e-181 638.6 713 55.1
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.2e-180 637.5 713 53.4
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 1.6e-180 637.1 719 52.4
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 3.6e-180 636.0 713 55.0
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 4.7e-180 635.6 713 55.5
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.8e-179 633.6 718 52.4
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 5.2e-179 632.1 709 52.3
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 6.7e-179 631.7 713 52.9
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 6.3e-177 625.2 639 56.0
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 3.1e-176 622.9 711 52.5
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 5.3e-176 622.1 708 52.1
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 9.1e-176 621.3 707 51.9
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 4.5e-175 619.0 717 52.3
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 4.5e-175 619.0 704 54.4
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 3.8e-174 615.9 710 51.3
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 2.5e-173 613.2 715 52.0
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 9.4e-173 611.3 707 52.5
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.4e-171 607.4 715 50.5
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 8.8e-171 604.7 711 52.9
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 5.7e-170 602.1 716 51.1
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.7e-170 602.1 716 53.1
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 1.3e-169 600.9 694 50.7
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.2e-169 600.1 713 53.2
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.1e-168 597.8 700 51.6
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 2.7e-167 593.2 729 50.2
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 7.7e-167 591.7 700 50.7
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.0e-166 591.3 719 52.9
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 1.7e-166 590.5 741 49.5
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 2.2e-166 590.1 710 50.8
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.5e-165 587.4 713 53.0
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 7.2e-165 585.1 713 51.9
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 4.7e-164 582.4 727 50.2
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 8.0e-164 581.6 711 51.5
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 2.6e-162 576.6 716 49.0
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 2.8e-161 573.2 711 49.4
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 3.7e-161 572.8 707 50.2
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 1.1e-160 571.2 736 48.0
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 3.3e-157 559.7 774 47.0
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 7.3e-157 558.5 724 51.4
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 2.1e-156 557.0 710 51.0
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 2.3e-155 553.5 620 55.3
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 3.2e-152 543.1 721 48.7
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 7.8e-151 538.5 726 47.2
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 1.0e-150 538.1 714 47.3
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 4.3e-149 532.7 722 46.0
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 6.8e-147 525.4 733 46.0
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 8.9e-147 525.0 640 53.6
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.0e-146 523.9 568 57.0
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 4.4e-146 522.7 742 49.9
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 1.7e-145 520.8 640 49.7
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 8.3e-145 518.5 730 46.0
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 9.2e-144 515.0 712 46.8
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 1.7e-142 510.8 711 45.4
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 2.3e-142 510.4 712 46.6
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 3.6e-140 503.1 716 46.9
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 5.8e-138 495.7 816 42.3
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 6.4e-137 492.3 708 45.6
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 8.3e-137 491.9 715 44.9
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.6e-135 487.6 709 44.9
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 4.6e-135 486.1 777 43.4
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.3e-134 484.6 713 44.6
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 3.0e-134 483.4 718 44.3
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 7.3e-133 478.8 743 42.8
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 7.3e-133 478.8 712 43.3
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.6e-132 477.6 712 43.7
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 4.7e-132 476.1 720 45.1
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 2.3e-131 473.8 716 45.8
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 2.3e-131 473.8 719 43.9
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.3e-131 473.8 686 45.3
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 7.6e-130 468.8 708 43.5
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 3.7e-129 466.5 718 44.8
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 1.9e-128 464.2 735 42.3
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 7.1e-128 462.2 502 55.0
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 7.8e-127 458.8 712 44.0
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.3e-126 458.0 716 44.3
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 1.1e-125 454.9 638 46.6
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 7.3e-125 452.2 714 43.1
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 9.6e-125 451.8 716 42.0
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 1.2e-124 451.4 629 46.7
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 3.6e-124 449.9 645 44.7
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 8.1e-124 448.7 714 41.7
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 2.6e-122 443.7 726 43.8
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 1.1e-120 438.3 737 41.9
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 1.9e-120 437.6 746 41.7
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 2.1e-119 434.1 568 46.8
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 4.6e-119 433.0 717 43.1
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 3.9e-118 429.9 784 40.7
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.9e-117 427.6 790 36.8
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 9.9e-114 415.2 724 40.1
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 1.7e-113 414.5 805 39.4
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 6.0e-111 406.0 708 40.3
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 1.3e-110 404.8 654 40.4
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 3.0e-110 403.7 634 43.4
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 2.5e-109 400.6 671 40.8
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 3.6e-108 396.7 642 43.8
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 2.2e-105 387.5 687 40.0
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 4.9e-105 386.3 688 40.8
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 3.2e-104 383.6 674 39.5
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 3.2e-104 383.6 646 40.7
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.2e-104 383.3 730 40.0
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 2.3e-102 377.5 692 41.0
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 3.9e-102 376.7 686 40.5
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 5.1e-102 376.3 692 41.0
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.9e-101 374.4 644 40.2
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 4.3e-101 373.2 629 42.8
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 5.6e-101 372.9 686 40.4
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 2.1e-100 370.9 689 39.9
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.8e-100 370.5 583 41.9
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 2.8e-100 370.5 707 38.9
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 1.1e-99 368.6 687 39.7
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 4.0e-99 366.7 542 43.0
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 5.3e-99 366.3 689 39.3
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 1.5e-98 364.8 693 39.5
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 1.5e-98 364.8 693 39.2
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.6e-98 364.0 285 66.3
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 6.5e-97 359.4 686 38.8
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 4.6e-95 353.2 685 38.7
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.9e-93 347.8 717 36.0
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 1.8e-91 341.3 685 38.0
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 2.4e-91 340.9 695 37.4
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 4.2e-88 330.1 717 35.3
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 1.8e-86 324.7 869 32.5
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 8.2e-84 315.8 302 60.6
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.1e-83 313.9 380 47.4
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 7.7e-82 309.3 285 59.6
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 1.4e-80 305.1 373 50.9
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 7.9e-79 299.3 586 36.9
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 6.3e-76 289.7 616 36.0
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 8.2e-76 289.3 594 36.2
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.1e-75 288.9 726 35.7
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 6.9e-75 286.2 336 53.3
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 1.7e-73 281.6 690 32.9
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.6e-71 273.9 361 44.9
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 3.6e-71 273.9 338 46.7
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 4.7e-71 273.5 244 57.8
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 3.2e-64 250.8 655 32.4
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 1.7e-60 238.4 293 46.8
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 4.1e-59 233.8 446 38.8
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 1.5e-56 225.3 511 37.0
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.6e-50 205.3 139 72.7
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 5.7e-45 186.8 140 69.3
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 2.5e-40 171.4 207 46.9
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 9.5e-40 169.5 179 55.3
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 2.2e-36 158.3 131 61.1
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 4.9e-36 157.1 462 33.3
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 8.6e-33 146.4 736 30.6
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.3e-32 144.4 258 36.4
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 6.2e-31 140.2 307 33.6
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 4.4e-29 134.0 450 33.3
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 1.4e-27 129.0 150 56.7
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.4e-27 129.0 98 67.3
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 9.2e-27 126.3 210 39.5
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 3.2e-19 101.3 481 29.5
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.1e-15 88.6 67 70.1
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 5.2e-14 84.0 99 47.5
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 8.9e-14 83.2 67 58.2
TAR636G0984 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.2e-12 78.6 55 72.7
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.1e-10 72.0 108 48.1
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.7e-09 68.9 53 54.7
AagrBONN_evm.TU.Sc2ySwM_362.2615 Anthoceros agrestis HOM05D003626 ORTHO05D004255 5.6e-08 63.9 136 37.5
SHI13766 Sapria himalayana HOM05D003626 ORTHO05D004255 9.6e-08 63.2 197 29.4
HPP92_028446 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.1e-06 58.2 131 32.1
HPP92_027487 Vanilla planifolia HOM05D003626 ORTHO05D004255 6.9e-06 57.0 48 68.8


User provided reference genes

Program Settings