Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 0.0e+00 1172.1 617 100.0
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 7.2e-270 933.7 619 85.8
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 4.3e-214 748.4 628 71.5
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 5.0e-122 442.6 616 51.3
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 2.2e-45 188.0 752 30.5
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 6.5e-45 186.4 594 35.5
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 6.1e-43 179.9 679 32.0
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 2.0e-41 174.9 663 30.9
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.3e-41 174.1 663 30.9
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.3e-40 172.2 662 30.7
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.3e-40 172.2 676 31.7
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.2e-40 171.4 661 30.9
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.8e-40 171.0 660 30.6
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 2.8e-40 171.0 672 31.2
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.7e-40 170.6 659 30.3
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 3.1e-39 167.5 652 30.7
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 7.0e-39 166.4 749 30.2
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 2.0e-38 164.9 698 30.8
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 2.6e-38 164.5 616 32.0
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 4.5e-38 163.7 724 31.8
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 6.5e-37 159.8 723 29.9
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 1.5e-36 158.7 703 29.0
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 1.9e-36 158.3 766 31.1
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 4.2e-36 157.1 760 30.0
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 2.7e-35 154.5 703 30.9
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 2.7e-35 154.5 704 29.5
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 4.7e-35 153.7 736 31.2
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.0e-34 152.5 696 29.0
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 1.8e-34 151.8 740 30.1
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 2.3e-34 151.4 747 29.7
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 3.0e-34 151.0 649 29.7
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 4.0e-34 150.6 730 30.5
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 5.2e-34 150.2 722 31.0
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 8.8e-34 149.4 762 28.1
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 8.8e-34 149.4 719 29.1
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 1.5e-33 148.7 704 29.1
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.3e-33 147.5 567 31.2
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 4.4e-33 147.1 643 29.4
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 1.7e-32 145.2 675 31.7
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 2.2e-32 144.8 713 29.7
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 2.8e-32 144.4 628 30.9
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 3.7e-32 144.1 705 30.4
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 8.2e-32 142.9 770 28.8
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 1.1e-31 142.5 697 29.6
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 9.1e-31 139.4 696 29.5
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 2.0e-30 138.3 741 27.4
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 2.0e-30 138.3 761 27.9
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 3.5e-30 137.5 755 30.1
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 5.9e-30 136.7 713 28.3
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 5.9e-30 136.7 709 27.6
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 1.0e-29 136.0 769 29.5
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 1.3e-29 135.6 678 29.2
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 1.7e-29 135.2 777 28.7
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.7e-29 135.2 771 30.7
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 2.2e-29 134.8 660 29.5
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 8.5e-29 132.9 675 30.2
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 1.5e-28 132.1 720 28.6
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 2.5e-28 131.3 662 28.9
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 2.5e-28 131.3 660 30.2
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 4.2e-28 130.6 709 27.8
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 5.5e-28 130.2 632 30.1
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 7.2e-28 129.8 773 27.6
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 7.2e-28 129.8 682 28.7
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 1.6e-27 128.6 648 29.6
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.1e-27 128.3 687 28.7
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 3.6e-27 127.5 726 28.2
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 3.6e-27 127.5 660 28.5
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 6.1e-27 126.7 703 29.4
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.0e-26 125.9 657 29.2
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 1.0e-26 125.9 625 28.5
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.4e-26 125.6 630 28.3
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 1.4e-26 125.6 708 29.4
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 1.8e-26 125.2 718 29.7
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 3.0e-26 124.4 593 29.3
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 3.0e-26 124.4 699 27.3
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.2e-25 122.5 629 29.7
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.0e-25 121.7 731 26.8
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 3.4e-25 120.9 619 30.2
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 4.4e-25 120.6 765 27.7
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 5.7e-25 120.2 684 28.9
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 5.7e-25 120.2 653 27.6
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 5.7e-25 120.2 737 27.7
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 2.8e-24 117.9 685 28.9
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 1.1e-23 115.9 654 29.4
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.4e-23 115.5 648 29.8
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.8e-23 115.2 728 28.7
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 1.8e-23 115.2 295 36.3
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 3.1e-23 114.4 572 29.2
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 7.0e-23 113.2 653 29.4
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 7.0e-23 113.2 753 26.6
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 1.6e-22 112.1 656 29.3
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 1.6e-22 112.1 588 28.7
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 2.7e-22 111.3 687 29.5
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 7.7e-22 109.8 763 26.6
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 1.3e-21 109.0 502 31.3
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 1.3e-21 109.0 631 28.2
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 1.7e-21 108.6 728 28.8
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 2.9e-21 107.8 673 27.6
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 3.8e-21 107.5 688 28.2
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 5.0e-21 107.1 588 29.4
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 6.5e-21 106.7 752 27.0
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 1.1e-20 105.9 630 27.0
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.6e-19 102.1 629 27.5
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 3.6e-19 100.9 677 27.2
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 8.0e-19 99.8 294 35.4
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 3.0e-18 97.8 578 26.6
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 5.2e-18 97.1 672 27.1
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 6.8e-18 96.7 512 25.8
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 8.8e-18 96.3 465 31.6
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 7.5e-17 93.2 549 27.7
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 9.8e-17 92.8 574 27.5
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 1.3e-16 92.4 718 25.9
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 1.7e-16 92.0 349 33.2
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 1.7e-16 92.0 678 26.0
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 2.2e-16 91.7 708 27.7
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 3.7e-16 90.9 570 28.2
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 8.3e-16 89.7 777 25.4
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 1.4e-15 89.0 297 36.7
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 3.1e-15 87.8 283 34.3
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 3.1e-15 87.8 685 26.6
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 4.1e-15 87.4 614 27.5
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 7.0e-15 86.7 392 30.6
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 2.0e-14 85.1 613 27.6
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 7.7e-14 83.2 802 25.2
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 1.9e-12 78.6 286 33.9
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 2.5e-12 78.2 703 26.5
MELO3C005394.2 Cucumis melo HOM05D003765 ORTHO05D004561 2.8e-11 74.7 156 39.7
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 1.0e-10 72.8 284 32.7
arahy.Tifrunner.gnm1.ann1.XAW92V Arachis hypogaea HOM05D003765 ORTHO05D004561 4.0e-10 70.9 187 36.4
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 6.8e-10 70.1 595 27.1
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.5e-09 68.9 601 25.1
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.5e-09 68.9 298 32.6
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 2.0e-09 68.6 653 26.6
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 4.4e-09 67.4 330 30.9
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 4.4e-09 67.4 371 28.6
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 7.5e-09 66.6 619 25.5
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 7.5e-09 66.6 257 30.0
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 7.5e-09 66.6 565 24.8
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 7.5e-09 66.6 394 27.7
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 9.8e-09 66.2 257 30.0
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 1.7e-08 65.5 318 31.1
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 2.9e-08 64.7 214 33.6
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 4.9e-08 63.9 335 29.9
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 4.9e-08 63.9 260 31.5
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 1.4e-07 62.4 352 28.7
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 1.8e-07 62.0 559 25.4
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 2.4e-07 61.6 559 25.4
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 2.4e-07 61.6 294 27.2
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 5.4e-07 60.5 420 28.3
Lalb_Chr19g0131131 Lupinus albus HOM05D003765 ORTHO05D004561 5.4e-07 60.5 201 32.3
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 1.2e-06 59.3 292 30.5
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 1.6e-06 58.9 197 33.0
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 2.0e-06 58.5 295 29.2
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 2.0e-06 58.5 116 41.4
VMungo0100G0003 Vigna mungo HOM05D003765 ORTHO05D004561 4.6e-06 57.4 78 48.7


User provided reference genes

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