Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G016270 Cucumis sativus L. HOM05D007220 ORTHO05D009058 4.1e-102 374.8 194 100.0
MELO3C006826.2 Cucumis melo HOM05D007220 ORTHO05D009058 1.9e-96 355.9 200 92.5
ClCG05G007450 Citrullus lanatus HOM05D007220 ORTHO05D009058 2.5e-91 339.0 200 87.0
Cfa008220 Carpinus fangiana HOM05D007220 ORTHO05D009058 2.9e-52 209.1 199 63.3
Manes.14G034000 Manihot esculenta HOM05D007220 ORTHO05D009058 3.3e-51 205.7 204 58.8
Thecc.03G158900 Theobroma cacao HOM05D007220 ORTHO05D009058 1.2e-50 203.8 197 62.9
Sed0003033 Sechium edule HOM05D007220 ORTHO05D009058 1.6e-50 203.4 156 75.0
Haze_13838 Corylus avellana HOM05D007220 ORTHO05D009058 8.0e-50 201.1 201 61.2
GSVIVG01018558001 Vitis vinifera HOM05D007220 ORTHO05D009058 2.6e-48 196.1 173 64.2
TWI39G1186 Tripterygium wilfordii HOM05D007220 ORTHO05D009058 1.3e-47 193.7 195 60.0
MD01G1184500 Malus domestica HOM05D007220 ORTHO05D009058 1.1e-46 190.7 187 58.3
CiPaw.04G061800 Carya illinoinensis HOM05D007220 ORTHO05D009058 1.4e-46 190.3 204 58.8
Duzib205G1715 Durio zibethinus HOM05D007220 ORTHO05D009058 9.2e-46 187.6 198 56.1
QL09p019051 Quercus lobata HOM05D007220 ORTHO05D009058 1.2e-45 187.2 206 56.3
Sabra15G0142900 Salix brachista HOM05D007220 ORTHO05D009058 1.0e-44 184.1 199 57.3
Dinv28549 Davidia involucrata HOM05D007220 ORTHO05D009058 5.0e-44 181.8 203 54.2
COL.COLO4_14153 Corchorus olitorius HOM05D007220 ORTHO05D009058 8.6e-44 181.0 197 55.8
Cc02_g04040 Coffea canephora HOM05D007220 ORTHO05D009058 1.1e-43 180.6 225 52.9
Eucgr.A02878 Eucalyptus grandis HOM05D007220 ORTHO05D009058 1.1e-43 180.6 195 53.8
AUR62016183 Chenopodium quinoa HOM05D007220 ORTHO05D009058 4.3e-43 178.7 202 55.0
THA.LOC104811513 Tarenaya hassleriana HOM05D007220 ORTHO05D009058 4.3e-43 178.7 197 55.8
Actinidia25024 Actinidia chinensis HOM05D007220 ORTHO05D009058 2.8e-42 176.0 187 55.1
Carub.0008s1158 Capsella rubella HOM05D007220 ORTHO05D009058 2.8e-42 176.0 193 54.9
Dinv22967 Davidia involucrata HOM05D007220 ORTHO05D009058 2.8e-42 176.0 210 52.9
BcaC01g06128 Brassica carinata HOM05D007220 ORTHO05D009058 3.6e-42 175.6 192 55.7
C03p18980 Brassica napus HOM05D007220 ORTHO05D009058 3.6e-42 175.6 192 55.7
BolC3t14287H Brassica oleracea HOM05D007220 ORTHO05D009058 3.6e-42 175.6 192 55.7
FAN03G0488 Fragaria x ananassa HOM05D007220 ORTHO05D009058 3.6e-42 175.6 175 55.4
FAN03G2818 Fragaria x ananassa HOM05D007220 ORTHO05D009058 3.6e-42 175.6 175 55.4
AT5G51545 Arabidopsis thaliana HOM05D007220 ORTHO05D009058 1.0e-41 174.1 198 54.0
Gohir.D07G043100 Gossypium hirsutum HOM05D007220 ORTHO05D009058 1.0e-41 174.1 105 80.0
Gorai.001G046100 Gossypium raimondii HOM05D007220 ORTHO05D009058 1.8e-41 173.3 105 80.0
RcHm_v2.0_Chr1g0374911 Rosa chinensis HOM05D007220 ORTHO05D009058 5.2e-41 171.8 175 56.0
AL8G25850 Arabidopsis lyrata HOM05D007220 ORTHO05D009058 6.8e-41 171.4 192 52.6
FAN06G4318 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.2e-40 170.6 175 55.4
Potri.015G129600 Populus trichocarpa HOM05D007220 ORTHO05D009058 1.2e-40 170.6 196 54.1
vmacro09892 Vaccinium macrocarpon HOM05D007220 ORTHO05D009058 1.5e-40 170.2 206 53.9
BraA03t10902Z Brassica rapa HOM05D007220 ORTHO05D009058 2.0e-40 169.9 191 54.5
FvH4_7g27960 Fragaria vesca HOM05D007220 ORTHO05D009058 2.6e-40 169.5 175 55.4
Sc19g0001910 Simmondsia chinensis HOM05D007220 ORTHO05D009058 2.6e-40 169.5 191 56.0
Cpa.g.sc3.292 Carica papaya HOM05D007220 ORTHO05D009058 4.4e-40 168.7 200 52.0
arahy.Tifrunner.gnm1.ann1.0IXC5E Arachis hypogaea HOM05D007220 ORTHO05D009058 5.8e-40 168.3 108 75.0
Ciclev10005924m.g Citrus clementina HOM05D007220 ORTHO05D009058 5.8e-40 168.3 208 51.0
Gohir.A07G038900 Gossypium hirsutum HOM05D007220 ORTHO05D009058 9.8e-40 167.5 192 53.1
FAN10G3220 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.7e-39 166.8 175 54.9
Glyma.09G232600 Glycine max HOM05D007220 ORTHO05D009058 2.9e-39 166.0 158 58.9
Sp6g13740 Schrenkiella parvula HOM05D007220 ORTHO05D009058 2.9e-39 166.0 192 53.6
EL10Ac3g05813 Beta vulgaris HOM05D007220 ORTHO05D009058 3.7e-39 165.6 210 51.4
PGR042G1708 Punica granatum HOM05D007220 ORTHO05D009058 3.7e-39 165.6 205 52.7
Rhsim09G0192800 Rhododendron simsii HOM05D007220 ORTHO05D009058 1.1e-38 164.1 214 50.9
FAN01G2832 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.4e-38 163.7 170 54.7
FAN06G0674 Fragaria x ananassa HOM05D007220 ORTHO05D009058 2.4e-38 162.9 175 54.3
SGA_v2.0_scaffold2G01175 Striga asiatica HOM05D007220 ORTHO05D009058 5.4e-38 161.8 183 53.0
BcaB01g04168 Brassica carinata HOM05D007220 ORTHO05D009058 7.0e-38 161.4 192 52.6
Solyc03g083570.3 Solanum lycopersicum HOM05D007220 ORTHO05D009058 7.0e-38 161.4 184 54.3
HanXRQChr08g0223851 Helianthus annuus HOM05D007220 ORTHO05D009058 1.2e-37 160.6 155 59.4
Nn4g26358 Nelumbo nucifera HOM05D007220 ORTHO05D009058 2.0e-37 159.8 202 51.0
Nitab4.5_0001548g0050 Nicotiana tabacum HOM05D007220 ORTHO05D009058 2.0e-37 159.8 196 52.6
MSTRG.27183 Avicennia marina HOM05D007220 ORTHO05D009058 3.5e-37 159.1 188 54.8
unitig_46.g18768 Utricularia gibba HOM05D007220 ORTHO05D009058 7.8e-37 157.9 187 52.4
SGA_v2.0_scaffold486G52391 Striga asiatica HOM05D007220 ORTHO05D009058 1.0e-36 157.5 195 53.3
VMungo1127G0384 Vigna mungo HOM05D007220 ORTHO05D009058 1.3e-36 157.1 165 54.5
Phvul.011G004500 Phaseolus vulgaris HOM05D007220 ORTHO05D009058 3.9e-36 155.6 163 53.4
A03p16110 Brassica napus HOM05D007220 ORTHO05D009058 6.6e-36 154.8 191 50.8
Lsat_1_v5_gn_8_9340 Lactuca sativa HOM05D007220 ORTHO05D009058 1.1e-35 154.1 158 57.0
Peaxi162Scf00241g00624 Petunia axillaris HOM05D007220 ORTHO05D009058 1.9e-35 153.3 191 51.3
Atru.chr1.664 Acer truncatum HOM05D007220 ORTHO05D009058 2.5e-35 152.9 201 49.3
CARHR264320 Cardamine hirsuta HOM05D007220 ORTHO05D009058 2.5e-35 152.9 199 49.7
Medtr4g035825 Medicago truncatula HOM05D007220 ORTHO05D009058 3.3e-35 152.5 170 52.9
CAN.G152.17 Capsicum annuum HOM05D007220 ORTHO05D009058 4.3e-35 152.1 107 71.0
CSS0026352 Camellia sinensis var. sinensis HOM05D007220 ORTHO05D009058 5.6e-35 151.8 106 74.5
Ca_30916_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 5.6e-35 151.8 193 49.7
Aa31LG3G7960 Aethionema arabicum HOM05D007220 ORTHO05D009058 9.5e-35 151.0 193 49.7
Nitab4.5_0000072g0560 Nicotiana tabacum HOM05D007220 ORTHO05D009058 1.6e-34 150.2 194 51.5
Sopen03g023380 Solanum pennellii HOM05D007220 ORTHO05D009058 1.6e-34 150.2 108 69.4
SalBow4G2286 Salvia bowleyana HOM05D007220 ORTHO05D009058 3.6e-34 149.1 178 52.8
Aqoxy7G00673 Aquilegia oxysepala HOM05D007220 ORTHO05D009058 1.4e-33 147.1 176 50.0
Migut.F00451 Erythranthe guttata HOM05D007220 ORTHO05D009058 8.9e-33 144.4 101 68.3
Psat7g150000 Pisum sativum HOM05D007220 ORTHO05D009058 1.5e-32 143.7 167 49.7
Lj3g0016008 Lotus japonicus HOM05D007220 ORTHO05D009058 2.0e-32 143.3 112 64.3
ECA233G2338 Erigeron canadensis HOM05D007220 ORTHO05D009058 7.5e-32 141.4 159 58.5
CDE09G0763 Ceratophyllum demersum HOM05D007220 ORTHO05D009058 9.8e-32 141.0 135 57.0
arahy.Tifrunner.gnm1.ann1.83G6QR Arachis hypogaea HOM05D007220 ORTHO05D009058 1.6e-29 133.7 85 74.1
PSO478G4327 Papaver somniferum HOM05D007220 ORTHO05D009058 2.7e-29 132.9 113 55.8
Lj8A39T34 Lonicera japonica HOM05D007220 ORTHO05D009058 3.5e-29 132.5 206 43.2
PSO782G3417 Papaver somniferum HOM05D007220 ORTHO05D009058 6.6e-28 128.3 177 41.8
SEGI_29714 Sequoiadendron giganteum HOM05D007220 ORTHO05D009058 3.3e-27 125.9 182 45.1
AUR62035102 Chenopodium quinoa HOM05D007220 ORTHO05D009058 2.8e-26 122.9 194 44.8
Zm00001eb230760 Zea mays HOM05D007220 ORTHO05D009058 4.0e-25 119.0 140 49.3
HPP92_002073 Vanilla planifolia HOM05D007220 ORTHO05D009058 1.5e-24 117.1 174 42.5
PGSC0003DMG400023001 Solanum tuberosum HOM05D007220 ORTHO05D009058 3.4e-24 115.9 175 41.7
Prupe.2G280700 Prunus persica HOM05D007220 ORTHO05D009058 7.6e-24 114.8 147 53.7
Potri.012G128000 Populus trichocarpa HOM05D007220 ORTHO05D009058 2.1e-21 106.7 197 42.1
TPR.G15117 Trifolium pratense HOM05D007220 ORTHO05D009058 1.7e-20 103.6 103 55.3
MELO3C034507.2 Cucumis melo HOM05D007220 ORTHO05D009058 1.9e-19 100.1 90 67.8
ATR0730G016 Amborella trichopoda HOM05D007220 ORTHO05D009058 3.3e-19 99.4 116 50.0
DCAR_009422 Daucus carota HOM05D007220 ORTHO05D009058 1.1e-17 94.4 145 46.9
DCAR_009423 Daucus carota HOM05D007220 ORTHO05D009058 1.1e-17 94.4 145 46.9
MD07G1256600 Malus domestica HOM05D007220 ORTHO05D009058 1.5e-16 90.5 52 75.0
AagrBONN_evm.TU.Sc2ySwM_228.5821 Anthoceros agrestis HOM05D007220 ORTHO05D009058 2.0e-16 90.1 139 40.3
TAR629G2293 Trochodendron aralioides HOM05D007220 ORTHO05D009058 1.3e-15 87.4 147 42.9
Pp3c26_11240 Physcomitrium patens HOM05D007220 ORTHO05D009058 6.4e-15 85.1 129 40.3
HanXRQChr04g0107801 Helianthus annuus HOM05D000901 ORTHO05D001160 9.3e-14 81.3 141 41.1
Mapoly0002s0242 Marchantia polymorpha HOM05D007220 ORTHO05D009058 6.0e-13 78.6 84 46.4
MBI12_g20320_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 1.1e-11 74.3 183 33.3
Ca_20051_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 3.3e-11 72.8 146 39.7
MBI12_g14970_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 6.2e-10 68.6 60 58.3
MBI12_g25331_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 5.3e-09 65.5 62 54.8


User provided reference genes

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