Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G016200 Cucumis sativus L. HOM05D006478 ORTHO05D008071 4.3e-87 324.7 173 100.0
MELO3C006818.2 Cucumis melo HOM05D006478 ORTHO05D008071 5.2e-85 317.8 173 96.5
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 8.7e-80 300.4 173 90.2
Sed0002492 Sechium edule HOM05D006478 ORTHO05D008071 8.7e-72 273.9 173 82.1
QL09p018992 Quercus lobata HOM05D006478 ORTHO05D008071 1.9e-50 203.0 172 62.8
CiPaw.04G061000 Carya illinoinensis HOM05D006478 ORTHO05D008071 2.7e-49 199.1 173 62.4
MD07G1255100 Malus domestica HOM05D006478 ORTHO05D008071 2.7e-49 199.1 173 61.3
Cfa008204 Carpinus fangiana HOM05D006478 ORTHO05D008071 7.9e-49 197.6 173 61.8
Prupe.2G278900 Prunus persica HOM05D006478 ORTHO05D008071 6.7e-48 194.5 173 61.3
RcHm_v2.0_Chr4g0413311 Rosa chinensis HOM05D006478 ORTHO05D008071 1.8e-45 186.4 174 56.3
GSVIVG01018613001 Vitis vinifera HOM05D006478 ORTHO05D008071 3.1e-45 185.7 175 60.0
Dinv22954 Davidia involucrata HOM05D006478 ORTHO05D008071 5.3e-45 184.9 175 58.3
Ciclev10006041m.g Citrus clementina HOM05D006478 ORTHO05D008071 9.0e-45 184.1 174 57.5
FAN12G3923 Fragaria x ananassa HOM05D006478 ORTHO05D008071 3.4e-44 182.2 173 54.9
FAN17G1857 Fragaria x ananassa HOM05D006478 ORTHO05D008071 5.9e-44 181.4 173 54.9
Atru.chr1.683 Acer truncatum HOM05D006478 ORTHO05D008071 7.7e-44 181.0 174 57.5
CANSAT56G4273 Cannabis sativa HOM05D006478 ORTHO05D008071 1.0e-43 180.6 173 53.2
FvH4_4g13180 Fragaria vesca HOM05D006478 ORTHO05D008071 6.5e-43 177.9 173 53.8
PGR042G2342 Punica granatum HOM05D006478 ORTHO05D008071 1.9e-42 176.4 173 55.5
Manes.14G035000 Manihot esculenta HOM05D006478 ORTHO05D008071 2.5e-42 176.0 171 56.7
CSS0007785 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 3.2e-42 175.6 179 55.3
DCAR_018100 Daucus carota HOM05D006478 ORTHO05D008071 9.4e-42 174.1 173 53.8
Dinv28557 Davidia involucrata HOM05D000120 ORTHO05D000068 9.4e-42 174.1 164 57.3
Actinidia31787 Actinidia chinensis HOM05D006478 ORTHO05D008071 1.6e-41 173.3 175 54.3
Sabra12G0096300 Salix brachista HOM05D006478 ORTHO05D008071 1.6e-41 173.3 173 55.5
CSS0006490 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 4.6e-41 171.8 179 54.2
Cc07_g16780 Coffea canephora HOM05D006478 ORTHO05D008071 3.0e-40 169.1 173 51.4
TWI23G1172 Tripterygium wilfordii HOM05D006478 ORTHO05D008071 3.0e-40 169.1 173 54.3
Potri.012G127100 Populus trichocarpa HOM05D006478 ORTHO05D008071 5.1e-40 168.3 173 53.8
TAR629G1779 Trochodendron aralioides HOM05D006478 ORTHO05D008071 1.1e-39 167.2 183 52.5
SalBow5G3546 Salvia bowleyana HOM05D006478 ORTHO05D008071 1.5e-39 166.8 173 52.6
SalBow5G4313 Salvia bowleyana HOM05D006478 ORTHO05D008071 1.5e-39 166.8 173 52.6
MSTRG.8414 Avicennia marina HOM05D006478 ORTHO05D008071 2.5e-39 166.0 173 52.6
DCAR_028724 Daucus carota HOM05D006478 ORTHO05D008071 2.5e-39 166.0 175 52.6
Eucgr.A02884 Eucalyptus grandis HOM05D006478 ORTHO05D008071 1.7e-38 163.3 173 52.6
Migut.O00298 Erythranthe guttata HOM05D006478 ORTHO05D008071 2.2e-38 162.9 172 51.2
CAN.G645.17 Capsicum annuum HOM05D006478 ORTHO05D008071 1.1e-37 160.6 173 50.3
Nitab4.5_0001383g0120 Nicotiana tabacum HOM05D006478 ORTHO05D008071 3.1e-37 159.1 173 49.7
PSO782G1599 Papaver somniferum HOM05D006478 ORTHO05D008071 5.3e-37 158.3 164 51.2
PSO170G1682 Papaver somniferum HOM05D006478 ORTHO05D008071 6.9e-37 157.9 164 51.2
SGA_v2.0_scaffold10G05491 Striga asiatica HOM05D006478 ORTHO05D008071 9.1e-37 157.5 173 49.1
AUR62015523 Chenopodium quinoa HOM05D006478 ORTHO05D008071 1.5e-36 156.8 175 50.9
Nn6g34073 Nelumbo nucifera HOM05D006478 ORTHO05D008071 1.5e-36 156.8 178 48.9
Sopen11g002780 Solanum pennellii HOM05D006478 ORTHO05D008071 1.5e-36 156.8 173 49.7
Haze_13851 Corylus avellana HOM05D006478 ORTHO05D008071 2.6e-36 156.0 173 52.6
HanXRQChr13g0420601 Helianthus annuus HOM05D006478 ORTHO05D008071 2.6e-36 156.0 173 48.0
Sc19g0001980 Simmondsia chinensis HOM05D006478 ORTHO05D008071 2.9e-35 152.5 175 47.4
Hma1.2p1_0146F.1_g065730 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 3.8e-35 152.1 180 52.2
AUR62002188 Chenopodium quinoa HOM05D006478 ORTHO05D008071 5.0e-35 151.8 175 49.1
EL10Ac3g05828 Beta vulgaris HOM05D006478 ORTHO05D008071 8.5e-35 151.0 175 49.1
THA.LOC104811518 Tarenaya hassleriana HOM05D006478 ORTHO05D008071 1.1e-34 150.6 168 52.4
Lsat_1_v5_gn_8_8920 Lactuca sativa HOM05D006478 ORTHO05D008071 2.5e-34 149.4 173 47.4
Thhalv10014843m.g Eutrema salsugineum HOM05D006478 ORTHO05D008071 9.4e-34 147.5 173 50.3
FAN07G1397 Fragaria x ananassa HOM05D006478 ORTHO05D008071 9.4e-34 147.5 149 51.0
Sp6g13670 Schrenkiella parvula HOM05D006478 ORTHO05D008071 1.6e-33 146.7 173 50.3
AL8G25810 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 1.8e-32 143.3 173 49.1
Atru.chr12.858 Acer truncatum HOM05D006478 ORTHO05D008071 3.0e-32 142.5 124 62.9
BcaB08g35507 Brassica carinata HOM05D006478 ORTHO05D008071 3.9e-32 142.1 174 47.7
Carub.0008s1155 Capsella rubella HOM05D006478 ORTHO05D008071 3.9e-32 142.1 173 48.6
AL64U10030 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 5.1e-32 141.7 173 48.6
AT5G51510 Arabidopsis thaliana HOM05D006478 ORTHO05D008071 5.1e-32 141.7 173 48.0
CARHR264290 Cardamine hirsuta HOM05D006478 ORTHO05D008071 6.7e-32 141.4 173 49.1
Sed0011118 Sechium edule HOM05D006478 ORTHO05D008071 8.8e-32 141.0 173 52.0
Os10g0508600 Oryza sativa ssp. japonica HOM05D006478 ORTHO05D008071 1.5e-31 140.2 173 45.1
BcaC04g20665 Brassica carinata HOM05D006478 ORTHO05D008071 2.6e-31 139.4 174 48.3
A10p09440 Brassica napus HOM05D006478 ORTHO05D008071 2.6e-31 139.4 176 47.7
C09p40820 Brassica napus HOM05D006478 ORTHO05D008071 2.6e-31 139.4 174 48.3
BolC9t56962H Brassica oleracea HOM05D006478 ORTHO05D008071 2.6e-31 139.4 174 48.3
BraA10t43020Z Brassica rapa HOM05D006478 ORTHO05D008071 2.6e-31 139.4 176 47.7
vmacro09898 Vaccinium macrocarpon HOM05D006478 ORTHO05D008071 5.7e-31 138.3 166 47.6
arahy.Tifrunner.gnm1.ann1.R2ZWGQ Arachis hypogaea HOM05D006478 ORTHO05D008071 7.4e-31 137.9 181 45.3
Medtr3g075310 Medicago truncatula HOM05D006478 ORTHO05D008071 8.2e-30 134.4 180 44.4
ECA233G2919 Erigeron canadensis HOM05D006478 ORTHO05D008071 1.1e-29 134.0 173 43.4
Peaxi162Scf00241g00526 Petunia axillaris HOM05D006478 ORTHO05D008071 2.4e-29 132.9 131 55.0
TPR.G3657 Trifolium pratense HOM05D006478 ORTHO05D008071 7.0e-29 131.3 178 43.8
Psat2g100400 Pisum sativum HOM05D006478 ORTHO05D008071 1.5e-28 130.2 181 42.5
Psat3g066720 Pisum sativum HOM05D006478 ORTHO05D008071 2.0e-28 129.8 180 43.9
Lj6g0019546 Lotus japonicus HOM05D006478 ORTHO05D008071 4.5e-28 128.6 181 40.3
ECA247G1821 Erigeron canadensis HOM05D006478 ORTHO05D008071 1.3e-27 127.1 173 42.8
Duzib213G0671 Durio zibethinus HOM05D006478 ORTHO05D008071 1.7e-27 126.7 174 43.7
Phvul.011G177900 Phaseolus vulgaris HOM05D006478 ORTHO05D008071 1.7e-27 126.7 181 39.8
Zm00001eb043910 Zea mays HOM05D006478 ORTHO05D008071 1.7e-27 126.7 171 42.1
Thecc.07G184100 Theobroma cacao HOM05D006478 ORTHO05D008071 2.9e-27 125.9 174 43.7
Ca_03612_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 6.5e-27 124.8 180 41.1
Glyma.18G235100 Glycine max HOM05D006478 ORTHO05D008071 8.5e-27 124.4 181 38.7
Gohir.A01G099000 Gossypium hirsutum HOM05D006478 ORTHO05D008071 1.9e-26 123.2 174 43.1
Gohir.D01G083500 Gossypium hirsutum HOM05D006478 ORTHO05D008071 2.5e-26 122.9 174 43.7
Gorai.002G109200 Gossypium raimondii HOM05D006478 ORTHO05D008071 2.5e-26 122.9 174 43.7
Glyma.09G257500 Glycine max HOM05D006478 ORTHO05D008071 5.5e-26 121.7 216 33.3
arahy.Tifrunner.gnm1.ann1.LW4644 Arachis hypogaea HOM05D006478 ORTHO05D008071 7.2e-26 121.3 127 49.6
Aa31LG3G7930 Aethionema arabicum HOM05D006478 ORTHO05D008071 9.4e-26 120.9 203 43.3
HPP92_021027 Vanilla planifolia HOM05D006478 ORTHO05D008071 6.1e-25 118.2 170 44.1
CDE02G0477 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 8.0e-25 117.9 123 48.0
Lalb_Chr19g0140371 Lupinus albus HOM05D006478 ORTHO05D008071 8.0e-25 117.9 182 39.6
PGSC0003DMG400023983 Solanum tuberosum HOM05D006478 ORTHO05D008071 1.4e-24 117.1 178 40.4
Hma1.2p1_0654F.1_g196670 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 4.0e-24 115.5 180 40.0
ATR0049G082 Amborella trichopoda HOM05D006478 ORTHO05D008071 1.3e-22 110.5 112 54.5
CDE11G0941 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 8.2e-22 107.8 114 48.2
CAN.G1338.3 Capsicum annuum HOM05D006478 ORTHO05D008071 3.1e-21 105.9 128 44.5
Rhsim09G0192300 Rhododendron simsii HOM05D006478 ORTHO05D008071 5.3e-21 105.1 150 43.3
Aqoxy3G03162 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 3.5e-20 102.4 170 34.1
Mapoly0022s0103 Marchantia polymorpha HOM05D006478 ORTHO05D008071 1.5e-18 97.1 174 33.9
RcHm_v2.0_Chr4g0409771 Rosa chinensis HOM05D006478 ORTHO05D008071 3.2e-18 95.9 108 46.3
Hund04605 Selenicereus undatus HOM05D006478 ORTHO05D008071 7.2e-18 94.7 133 42.9
unitig_8.g3700 Utricularia gibba HOM05D006478 ORTHO05D008071 4.7e-17 92.0 145 36.6
Solyc11g006880.3 Solanum lycopersicum HOM05D006478 ORTHO05D008071 5.2e-16 88.6 119 39.5
TAR125G0001 Trochodendron aralioides HOM05D006478 ORTHO05D008071 1.5e-15 87.0 165 37.0
Prupe.2G279400 Prunus persica HOM05D006478 ORTHO05D008071 9.8e-15 84.3 88 51.1
VMungo1127G0460 Vigna mungo HOM05D006478 ORTHO05D008071 1.8e-13 80.1 158 30.4
Manes.03G110816 Manihot esculenta HOM05D006478 ORTHO05D008071 7.0e-13 78.2 50 80.0
Pp3c3_28350 Physcomitrium patens HOM05D006478 ORTHO05D008071 2.0e-12 76.6 172 29.7
Oeu014948.1 Olea europaea HOM05D006478 ORTHO05D008071 1.0e-11 74.3 173 30.6
Lj1g0017005 Lotus japonicus HOM05D006478 ORTHO05D008071 2.5e-10 69.7 144 32.6
Ca_10075_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 7.2e-10 68.2 49 69.4
CBR_g39926 Chara braunii HOM05D006478 ORTHO05D008071 6.1e-09 65.1 185 29.7
CiPaw.05G217800 Carya illinoinensis HOM05D006478 ORTHO05D008071 5.2e-08 62.0 72 45.8
HPP92_020994 Vanilla planifolia HOM05D006478 ORTHO05D008071 1.5e-07 60.5 111 34.2
Aqoxy3G03161 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 3.4e-07 59.3 137 29.2
Medtr1g069420 Medicago truncatula HOM05D002356 ORTHO05D002546 4.4e-07 58.9 61 49.2
Nitab4.5_0001780g0030 Nicotiana tabacum HOM05D006478 ORTHO05D008071 7.5e-07 58.2 69 37.7
SHI13954 Sapria himalayana HOM05D006478 ORTHO05D008071 2.2e-06 56.6 42 69.0
Actinidia03077 Actinidia chinensis HOM05D006478 ORTHO05D008071 4.9e-06 55.5 175 32.0


User provided reference genes

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