Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G016180 Cucumis sativus L. HOM05D003975 ORTHO05D009762 4.9e-103 379.4 389 100.0
MELO3C006816.2 Cucumis melo HOM05D003975 ORTHO05D009762 1.9e-83 314.3 389 83.3
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 1.0e-52 212.2 388 71.9
Sed0001623 Sechium edule HOM05D003975 ORTHO05D009762 1.3e-50 205.3 389 69.2
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 4.0e-41 173.7 388 58.0
Cfa008191 Carpinus fangiana HOM05D003975 ORTHO05D009762 1.2e-40 172.2 387 65.6
CANSAT11G0896 Cannabis sativa HOM05D003975 ORTHO05D009762 2.1e-37 161.4 389 63.5
CiPaw.03G094900 Carya illinoinensis HOM05D003975 ORTHO05D009762 2.1e-37 161.4 386 72.8
Haze_13863 Corylus avellana HOM05D003975 ORTHO05D009762 3.5e-37 160.6 387 57.9
Atru.chr1.696 Acer truncatum HOM05D003975 ORTHO05D009762 2.2e-34 151.4 385 48.1
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 2.2e-34 151.4 390 39.7
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 9.0e-33 146.0 306 47.7
TWI39G0436 Tripterygium wilfordii HOM05D003975 ORTHO05D009762 9.0e-33 146.0 389 60.9
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 7.7e-32 142.9 392 36.7
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 2.9e-31 141.0 392 43.9
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 3.9e-28 130.6 390 37.7
Atru.chr1.699 Acer truncatum HOM05D003975 ORTHO05D009762 4.3e-27 127.1 363 47.7
Manes.15G055100 Manihot esculenta HOM05D003975 ORTHO05D009762 5.7e-27 126.7 389 51.7
QL09p019427 Quercus lobata HOM05D003975 ORTHO05D009762 3.7e-26 124.0 385 51.9
THA.LOC104821407 Tarenaya hassleriana HOM05D003975 ORTHO05D009762 4.8e-26 123.6 389 60.9
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 8.2e-26 122.9 384 60.4
Eucgr.D00222 Eucalyptus grandis HOM05D003975 ORTHO05D009762 3.1e-25 120.9 389 57.1
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 3.1e-25 120.9 390 29.5
Thhalv10003595m.g Eutrema salsugineum HOM05D003975 ORTHO05D009762 4.1e-25 120.6 390 38.7
Gorai.003G114200 Gossypium raimondii HOM05D003975 ORTHO05D009762 5.3e-25 120.2 384 60.2
Sabra15G0031500 Salix brachista HOM05D003975 ORTHO05D009762 1.2e-24 119.0 390 39.7
GSVIVG01018516001 Vitis vinifera HOM05D003975 ORTHO05D009762 2.6e-24 117.9 306 64.1
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 4.5e-24 117.1 390 36.2
Duzib205G1466 Durio zibethinus HOM05D003975 ORTHO05D009762 7.7e-24 116.3 389 58.1
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 1.0e-23 115.9 306 44.1
AL8G39200 Arabidopsis lyrata HOM05D003975 ORTHO05D009762 1.3e-23 115.5 390 33.6
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 1.3e-23 115.5 390 42.3
COL.COLO4_14135 Corchorus olitorius HOM05D003975 ORTHO05D009762 1.3e-23 115.5 114 54.4
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 1.7e-23 115.2 390 40.8
Ciclev10004237m.g Citrus clementina HOM05D003975 ORTHO05D009762 2.2e-23 114.8 385 46.5
CSS0004960 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 5.0e-23 113.6 115 54.8
CSS0048267 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 6.5e-23 113.2 115 54.8
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 1.1e-22 112.5 116 53.4
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 1.1e-22 112.5 116 53.4
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 1.1e-22 112.5 116 53.4
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 1.1e-22 112.5 116 53.4
Dinv28563 Davidia involucrata HOM05D003975 ORTHO05D009762 4.2e-22 110.5 116 52.6
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 5.5e-22 110.2 390 42.8
Gohir.A03G058201 Gossypium hirsutum HOM05D003975 ORTHO05D009762 4.7e-21 107.1 110 52.7
Lj8C41T2 Lonicera japonica HOM05D003975 ORTHO05D009762 1.1e-19 102.4 114 50.0
PGR142G2422 Punica granatum HOM05D003975 ORTHO05D009762 1.5e-19 102.1 116 47.4
Rhsim09G0192100 Rhododendron simsii HOM05D000201 ORTHO05D000375 1.5e-19 102.1 116 51.7
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 5.7e-19 100.1 392 41.3
A01p18130 Brassica napus HOM05D003975 ORTHO05D009762 1.1e-17 95.9 117 44.4
BraA01t01768Z Brassica rapa HOM05D003975 ORTHO05D009762 1.1e-17 95.9 117 44.4
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 1.1e-17 95.9 116 46.6
BcaNung03569 Brassica carinata HOM05D003975 ORTHO05D009762 1.8e-17 95.1 117 44.4
C01p23090 Brassica napus HOM05D003975 ORTHO05D009762 1.8e-17 95.1 117 44.4
Cc00_g07030 Coffea canephora HOM05D003975 ORTHO05D009762 7.7e-16 89.7 116 44.8
CAN.G48.19 Capsicum annuum HOM05D003975 ORTHO05D009762 1.0e-15 89.4 116 41.4
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 1.7e-15 88.6 116 44.8
HanXRQChr05g0142511 Helianthus annuus HOM05D003975 ORTHO05D009762 2.9e-15 87.8 389 52.4
Lsat_1_v5_gn_8_8880 Lactuca sativa HOM05D003975 ORTHO05D009762 2.9e-15 87.8 116 44.8
TAR375G0346 Trochodendron aralioides HOM05D003975 ORTHO05D009762 3.8e-15 87.4 111 43.2
ECA233G1567 Erigeron canadensis HOM05D003975 ORTHO05D009762 2.5e-14 84.7 116 45.7
Solyc03g093150.3 Solanum lycopersicum HOM05D003975 ORTHO05D009762 5.5e-14 83.6 116 40.5
Sopen03g023950 Solanum pennellii HOM05D003975 ORTHO05D009762 1.2e-13 82.4 116 40.5
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.6e-13 82.0 116 40.5
Nitab4.5_0009543g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.6e-13 82.0 115 40.9
Peaxi162Scf00241g00015 Petunia axillaris HOM05D003975 ORTHO05D009762 8.0e-13 79.7 116 40.5
SGA_v2.0_scaffold2G01188 Striga asiatica HOM05D003975 ORTHO05D009762 8.0e-13 79.7 390 52.3
PGSC0003DMG402014825 Solanum tuberosum HOM05D003975 ORTHO05D009762 1.4e-12 79.0 116 39.7
Oeu023215.2 Olea europaea HOM05D003975 ORTHO05D009762 1.7e-10 72.0 116 38.8
MSTRG.8816 Avicennia marina HOM05D003975 ORTHO05D009762 3.7e-10 70.9 381 55.4
Nitab4.5_0002556g0070 Nicotiana tabacum HOM05D003975 ORTHO05D009762 8.2e-10 69.7 84 42.9
MBI04_g11438_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009762 4.1e-09 67.4 95 37.9
Aa31LG11G1250 Aethionema arabicum HOM05D003975 ORTHO05D009762 5.3e-09 67.0 86 38.4
QL05p001270 Quercus lobata HOM05D003975 ORTHO05D009762 1.0e-07 62.8 67 46.3
Nn1g01091 Nelumbo nucifera HOM05D003975 ORTHO05D009762 2.9e-07 61.2 113 34.5
ATR0743G137 Amborella trichopoda HOM05D003975 ORTHO05D009762 1.5e-06 58.9 109 31.2


User provided reference genes

Program Settings