Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 3.2e-114 415.2 231 100.0
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 2.7e-105 385.6 231 85.3
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 3.7e-70 268.9 209 66.5
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 1.4e-32 144.1 226 40.7
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 3.1e-32 142.9 194 41.8
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 1.6e-28 130.6 190 37.9
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 2.7e-28 129.8 202 39.6
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 4.6e-28 129.0 219 37.9
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 6.0e-28 128.6 188 39.4
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 1.0e-27 127.9 198 37.4
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.8e-27 127.1 182 39.0
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 2.3e-27 126.7 192 37.5
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 1.9e-26 123.6 202 39.6
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.9e-26 123.6 214 34.1
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.9e-26 123.6 214 34.1
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 5.6e-26 122.1 201 45.8
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.3e-25 120.9 124 49.2
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.8e-25 119.8 206 35.0
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.8e-25 119.8 186 35.5
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 4.8e-25 119.0 199 37.7
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 8.1e-25 118.2 214 33.2
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 4.0e-24 115.9 210 35.2
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 4.0e-24 115.9 184 37.0
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 5.3e-24 115.5 112 48.2
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 9.0e-24 114.8 182 37.4
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 1.5e-23 114.0 199 34.7
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 2.0e-23 113.6 202 35.1
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 2.6e-23 113.2 213 33.3
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 2.6e-23 113.2 196 34.7
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 4.5e-23 112.5 196 35.7
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 7.6e-23 111.7 192 33.9
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 7.6e-23 111.7 192 35.4
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 2.9e-22 109.8 185 41.6
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 2.9e-22 109.8 183 36.1
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 3.8e-22 109.4 207 36.7
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 1.1e-21 107.8 205 33.7
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.9e-21 107.1 185 37.3
Lj4g0025064 Lotus japonicus HOM05D003268 ORTHO05D003719 2.5e-21 106.7 132 42.4
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 3.2e-21 106.3 208 33.2
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 3.2e-21 106.3 179 34.1
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 4.2e-21 105.9 200 34.0
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 4.2e-21 105.9 200 34.0
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 4.2e-21 105.9 169 36.7
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 9.3e-21 104.8 194 42.3
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 3.5e-20 102.8 195 31.3
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 4.6e-20 102.4 195 31.3
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 4.6e-20 102.4 204 34.3
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 7.9e-20 101.7 185 33.0
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 7.9e-20 101.7 185 35.1
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 7.9e-20 101.7 185 35.1
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 1.3e-19 100.9 206 34.0
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.8e-19 100.5 184 33.2
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 1.8e-19 100.5 190 34.7
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 3.0e-19 99.8 196 31.6
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 3.0e-19 99.8 220 33.6
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 3.9e-19 99.4 184 34.2
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 3.9e-19 99.4 203 33.0
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 5.1e-19 99.0 191 33.5
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 5.1e-19 99.0 197 32.5
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 6.7e-19 98.6 184 34.2
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 6.7e-19 98.6 197 32.5
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 8.7e-19 98.2 132 40.9
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 1.5e-18 97.4 201 34.3
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 1.5e-18 97.4 204 32.4
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 1.5e-18 97.4 96 46.9
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 1.9e-18 97.1 96 45.8
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 1.9e-18 97.1 195 32.8
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 2.5e-18 96.7 208 32.7
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 2.5e-18 96.7 132 40.9
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 3.3e-18 96.3 191 31.4
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 3.3e-18 96.3 181 33.7
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 3.3e-18 96.3 201 32.3
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 3.3e-18 96.3 96 45.8
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 5.6e-18 95.5 173 32.9
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 7.4e-18 95.1 217 29.5
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 2.8e-17 93.2 97 47.4
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 3.7e-17 92.8 196 30.1
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 3.7e-17 92.8 194 32.0
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 4.8e-17 92.4 96 45.8
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 4.8e-17 92.4 185 33.5
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 6.2e-17 92.0 96 49.0
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 6.2e-17 92.0 200 29.5
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 8.2e-17 91.7 199 29.6
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 1.1e-16 91.3 188 32.4
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.4e-16 90.9 211 31.3
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.4e-16 90.9 207 33.3
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.8e-16 90.5 96 44.8
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 2.4e-16 90.1 214 31.8
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 2.4e-16 90.1 195 31.3
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 2.4e-16 90.1 189 34.9
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 2.4e-16 90.1 215 29.8
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 5.3e-16 89.0 212 30.7
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 6.9e-16 88.6 204 31.4
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 9.0e-16 88.2 214 28.0
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 9.0e-16 88.2 192 30.7
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 9.0e-16 88.2 198 33.3
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 1.2e-15 87.8 205 30.7
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 1.5e-15 87.4 223 30.9
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 2.0e-15 87.0 198 31.3
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 2.0e-15 87.0 198 31.3
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 2.0e-15 87.0 198 31.3
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 2.0e-15 87.0 181 32.0
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 2.0e-15 87.0 100 42.0
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 2.6e-15 86.7 192 38.5
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 3.4e-15 86.3 184 32.6
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 3.4e-15 86.3 186 32.8
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 3.4e-15 86.3 186 32.8
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 3.4e-15 86.3 202 33.2
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 3.4e-15 86.3 110 42.7
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 3.4e-15 86.3 204 31.9
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 4.5e-15 85.9 179 29.6
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 4.5e-15 85.9 186 30.6
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 4.5e-15 85.9 214 31.3
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 4.5e-15 85.9 85 49.4
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 4.5e-15 85.9 181 31.5
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 5.8e-15 85.5 205 32.7
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 5.8e-15 85.5 205 32.7
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 5.8e-15 85.5 203 32.5
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 5.8e-15 85.5 181 29.8
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 5.8e-15 85.5 175 30.9
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 7.6e-15 85.1 209 30.1
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.0e-14 84.7 108 39.8
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 1.3e-14 84.3 214 31.3
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 1.3e-14 84.3 130 38.5
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.3e-14 84.3 209 30.6
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.3e-14 84.3 209 30.6
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 2.2e-14 83.6 199 30.2
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 2.2e-14 83.6 188 30.9
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 2.2e-14 83.6 182 31.3
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.2e-14 83.6 98 46.9
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 2.2e-14 83.6 181 31.5
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 3.8e-14 82.8 209 27.8
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 3.8e-14 82.8 104 40.4
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 4.9e-14 82.4 190 36.3
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 4.9e-14 82.4 129 35.7
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 4.9e-14 82.4 205 30.7
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 4.9e-14 82.4 190 34.2
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 4.9e-14 82.4 190 34.2
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 8.4e-14 81.6 219 29.7
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 8.4e-14 81.6 102 40.2
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 1.4e-13 80.9 129 35.7
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.4e-13 80.9 104 43.3
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 2.5e-13 80.1 96 42.7
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 3.2e-13 79.7 130 36.2
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 4.2e-13 79.3 186 31.2
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 5.5e-13 79.0 137 31.4
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 5.5e-13 79.0 212 31.6
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 5.5e-13 79.0 212 31.6
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 1.2e-12 77.8 182 31.9
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 1.2e-12 77.8 186 30.6
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.2e-12 77.8 188 31.9
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 2.1e-12 77.0 132 33.3
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 3.5e-12 76.3 200 29.0
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 4.6e-12 75.9 196 27.6
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 4.6e-12 75.9 183 30.1
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 6.0e-12 75.5 212 28.8
AT3G17460 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 7.9e-12 75.1 95 36.8
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 1.0e-11 74.7 101 39.6
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 1.0e-11 74.7 166 30.7
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 1.3e-11 74.3 129 35.7
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 3.0e-11 73.2 130 33.8
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 3.0e-11 73.2 89 37.1
AL3G30540 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 3.9e-11 72.8 188 27.1
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 5.1e-11 72.4 108 36.1
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 5.1e-11 72.4 89 41.6
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 8.7e-11 71.6 177 28.8
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 1.1e-10 71.2 106 36.8
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 1.1e-10 71.2 106 36.8
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.5e-10 70.9 102 37.3
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 1.9e-10 70.5 110 39.1
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 4.3e-10 69.3 186 29.0
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 7.4e-10 68.6 107 37.4
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.3e-09 67.8 73 43.8
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 3.4e-07 59.7 222 27.5


User provided reference genes

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