Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.2e-134 482.3 242 100.0
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 6.4e-89 331.3 352 56.0
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.5e-85 320.1 351 54.1
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 3.1e-83 312.4 352 52.3
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 7.6e-82 307.8 352 47.7
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 7.6e-82 307.8 352 47.7
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 4.2e-80 302.0 344 53.5
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 4.2e-80 302.0 352 47.4
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 7.1e-80 301.2 351 47.0
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 1.2e-79 300.4 352 47.4
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.0e-78 297.4 352 46.6
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 2.3e-78 296.2 347 46.7
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 6.6e-78 294.7 352 48.3
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 1.3e-76 290.4 349 48.4
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 1.4e-75 287.0 351 46.7
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 2.6e-74 282.7 353 45.6
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 4.5e-74 282.0 352 46.3
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 5.8e-74 281.6 353 45.0
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 9.9e-74 280.8 350 46.6
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 1.7e-73 280.0 352 46.0
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 2.2e-73 279.6 350 45.1
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 2.9e-73 279.3 349 46.1
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.4e-72 276.9 349 45.6
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 4.2e-72 275.4 352 45.5
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 4.2e-72 275.4 352 45.5
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 2.7e-71 272.7 349 45.0
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 3.5e-71 272.3 349 44.7
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 6.0e-71 271.6 351 44.7
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 2.3e-70 269.6 349 44.4
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 3.9e-70 268.9 349 43.6
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 3.3e-69 265.8 349 45.3
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 4.3e-69 265.4 352 42.6
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 5.6e-69 265.0 350 44.3
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 1.3e-68 263.8 348 44.0
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 8.1e-68 261.2 351 43.9
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 1.8e-67 260.0 375 42.4
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.9e-67 258.1 352 42.9
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 2.0e-66 256.5 352 43.5
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 2.6e-66 256.1 341 45.5
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 4.5e-66 255.4 238 55.9
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 1.0e-65 254.2 352 43.5
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 3.8e-65 252.3 352 44.0
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 4.9e-65 251.9 352 43.8
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 1.9e-64 250.0 349 42.4
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 7.1e-64 248.1 353 42.8
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 1.2e-63 247.3 355 42.8
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.2e-63 247.3 352 42.3
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 1.2e-63 247.3 353 42.2
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 1.2e-63 247.3 352 40.9
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 1.6e-63 246.9 353 43.1
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 2.1e-63 246.5 353 42.8
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 2.1e-63 246.5 351 41.9
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 3.5e-63 245.7 352 42.3
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 6.0e-63 245.0 353 42.8
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.8e-62 243.4 355 42.3
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 1.5e-61 240.4 351 42.2
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 9.6e-61 237.7 352 42.3
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.1e-60 236.5 352 41.5
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 2.8e-60 236.1 353 40.8
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.1e-59 234.2 353 40.5
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.1e-59 234.2 353 39.9
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 2.4e-59 233.0 349 41.0
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 6.9e-59 231.5 352 40.3
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 6.9e-59 231.5 355 39.7
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 9.0e-59 231.1 349 41.0
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 4.5e-58 228.8 349 41.0
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.0e-57 227.6 353 39.9
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 2.9e-57 226.1 349 40.1
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 2.9e-57 226.1 353 38.5
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 3.8e-57 225.7 352 40.3
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 3.8e-57 225.7 351 39.9
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.2e-55 220.7 353 37.7
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 1.2e-55 220.7 351 39.6
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 2.7e-55 219.5 338 37.9
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 6.1e-55 218.4 351 38.5
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 7.9e-55 218.0 355 39.7
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 7.9e-55 218.0 311 39.9
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 1.0e-54 217.6 311 42.1
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 1.8e-54 216.9 349 37.8
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 5.1e-54 215.3 352 37.8
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 1.1e-53 214.2 349 39.5
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 5.7e-53 211.8 352 38.9
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 8.2e-52 208.0 330 39.7
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 1.8e-51 206.8 332 39.2
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 4.1e-51 205.7 351 37.3
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 6.9e-51 204.9 334 39.8
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 6.9e-51 204.9 311 40.2
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 1.2e-47 194.1 349 37.2
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 4.6e-47 192.2 350 37.1
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 1.4e-46 190.7 350 36.9
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 8.8e-46 188.0 349 35.5
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 2.0e-42 176.8 349 35.2
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 5.9e-42 175.3 133 62.4
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.0e-41 174.5 310 36.1
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 2.9e-41 172.9 349 34.7
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 1.9e-40 170.2 368 32.6
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 3.7e-36 156.0 118 66.9
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 4.8e-36 155.6 352 32.4
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 1.8e-35 153.7 125 64.8
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 2.4e-35 153.3 106 68.9
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 3.1e-35 152.9 99 75.8
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 7.0e-35 151.8 181 47.0
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.9e-34 148.7 109 67.0
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 7.7e-34 148.3 186 45.7
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.7e-33 147.1 186 45.2
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.2e-32 142.9 109 65.1
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 2.7e-31 139.8 329 30.4
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 1.1e-29 134.4 148 51.4
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 4.4e-29 132.5 347 29.1
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 5.7e-29 132.1 154 46.1
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 5.5e-24 115.5 354 27.1
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.0e-23 111.7 234 35.0
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 1.4e-19 100.9 87 56.3
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.0e-19 98.6 77 62.3
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-18 97.4 77 62.3
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.5e-17 91.7 66 68.2
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-15 87.4 66 62.1
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.3e-14 83.6 57 66.7
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.6e-13 80.1 57 63.2
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 4.4e-13 79.3 61 57.4
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 1.6e-10 70.9 51 64.7
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 2.7e-10 70.1 99 45.5
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.9e-10 68.9 95 41.1
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 7.7e-10 68.6 52 59.6


User provided reference genes

Program Settings