Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 9.4e-99 363.6 195 100.0
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 9.1e-94 347.1 195 94.9
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 1.5e-88 329.7 196 91.8
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 2.4e-86 322.4 193 89.1
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 7.5e-80 300.8 196 83.2
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 4.8e-79 298.1 195 83.6
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 6.3e-79 297.7 193 82.9
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.3e-79 297.7 191 83.2
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 4.1e-78 295.0 194 80.9
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 5.4e-78 294.7 192 82.3
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 1.2e-77 293.5 193 82.4
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 2.7e-77 292.4 185 83.2
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 4.5e-77 291.6 189 81.5
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 4.5e-77 291.6 186 83.3
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.3e-76 290.0 188 80.9
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 2.3e-76 289.3 185 82.7
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 2.3e-76 289.3 196 79.6
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 2.3e-76 289.3 195 80.5
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.9e-76 288.9 188 80.9
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.9e-76 288.9 188 80.9
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 2.9e-76 288.9 189 79.9
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 2.9e-76 288.9 186 82.8
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 3.8e-76 288.5 190 81.6
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 3.8e-76 288.5 185 82.2
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.0e-76 288.1 195 82.6
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 5.0e-76 288.1 189 81.0
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 6.5e-76 287.7 195 80.5
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.5e-75 286.6 188 80.9
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.5e-75 286.6 193 79.8
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 1.9e-75 286.2 195 77.9
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 2.5e-75 285.8 193 80.3
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.5e-75 285.8 189 79.4
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 2.5e-75 285.8 195 79.0
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 3.2e-75 285.4 188 79.8
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 4.2e-75 285.0 190 81.1
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 4.2e-75 285.0 189 81.5
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.5e-75 284.6 191 80.1
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 7.2e-75 284.3 186 81.7
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 7.2e-75 284.3 192 79.7
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 9.5e-75 283.9 181 83.4
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 9.5e-75 283.9 202 77.2
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 1.2e-74 283.5 189 80.4
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.2e-74 283.5 194 79.4
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 1.2e-74 283.5 191 79.1
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 2.1e-74 282.7 175 84.6
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 2.8e-74 282.3 181 80.7
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 3.6e-74 282.0 189 78.8
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 3.6e-74 282.0 189 78.8
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 6.1e-74 281.2 189 78.3
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 6.1e-74 281.2 192 79.2
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 8.0e-74 280.8 192 79.2
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 8.0e-74 280.8 200 77.5
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.3e-73 279.3 189 78.3
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 3.0e-73 278.9 191 78.5
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 3.0e-73 278.9 199 77.9
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 4.0e-73 278.5 194 77.8
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 6.8e-73 277.7 189 78.8
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 6.8e-73 277.7 189 78.8
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 8.8e-73 277.3 204 74.5
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.2e-72 276.9 176 83.5
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.2e-72 276.9 193 78.2
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.2e-72 276.9 177 82.5
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.0e-72 276.2 191 77.0
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 2.6e-72 275.8 185 78.9
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.6e-72 275.8 194 77.3
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.6e-72 275.8 186 77.4
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 3.4e-72 275.4 192 77.6
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 4.4e-72 275.0 181 80.1
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 5.7e-72 274.6 185 78.4
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 5.7e-72 274.6 186 78.0
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 5.7e-72 274.6 185 78.4
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 5.7e-72 274.6 195 76.4
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 7.5e-72 274.2 178 79.8
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 7.5e-72 274.2 185 78.4
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 9.8e-72 273.9 175 80.6
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 9.8e-72 273.9 196 76.5
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 1.7e-71 273.1 188 78.2
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.7e-71 273.1 186 80.1
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.7e-71 273.1 206 72.8
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 2.8e-71 272.3 190 75.8
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 3.7e-71 271.9 175 82.9
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 3.7e-71 271.9 186 79.0
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 8.3e-71 270.8 185 77.3
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 8.3e-71 270.8 185 77.3
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 3.1e-70 268.9 184 77.2
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.1e-70 268.9 197 74.6
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 7.0e-70 267.7 186 78.0
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.7e-69 265.8 194 74.2
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.7e-69 265.8 175 78.9
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.7e-69 265.8 189 75.7
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 3.5e-69 265.4 185 75.7
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 3.5e-69 265.4 185 75.7
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 3.5e-69 265.4 185 75.7
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 3.5e-69 265.4 185 75.7
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.5e-69 265.4 194 74.2
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 5.9e-69 264.6 187 76.5
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 7.8e-69 264.2 183 77.0
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.0e-68 263.8 235 66.0
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 1.3e-68 263.5 184 75.5
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.3e-68 263.5 175 78.3
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.7e-68 263.1 184 75.5
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.7e-68 263.1 184 75.5
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 2.9e-68 262.3 183 76.5
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 2.9e-68 262.3 183 76.0
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.8e-68 261.9 224 67.0
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 6.6e-68 261.2 186 76.3
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 5.6e-67 258.1 233 64.4
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 8.0e-66 254.2 142 95.1
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 4.0e-65 251.9 235 63.0
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.5e-64 250.0 161 82.6
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 3.4e-64 248.8 168 80.4
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 3.7e-63 245.4 168 81.0
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 8.3e-63 244.2 192 71.9
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.5e-61 238.8 191 70.2
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 3.5e-61 238.8 181 68.5
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 4.6e-61 238.4 244 57.8
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 3.0e-60 235.7 183 65.6
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 3.9e-60 235.3 191 69.6
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 4.7e-58 228.4 170 68.8
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 2.6e-56 222.6 138 84.1
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 3.4e-56 222.2 136 84.6
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 4.4e-56 221.9 139 83.5
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 5.8e-56 221.5 138 82.6
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 8.3e-55 217.6 133 84.2
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 3.0e-52 209.1 180 60.0
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 6.6e-52 208.0 174 62.6
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 3.6e-50 202.2 133 80.5
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.4e-48 195.7 125 83.2
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.7e-47 192.2 134 79.1
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.2e-46 189.1 140 72.1
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.3e-44 183.7 200 56.5
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 5.1e-44 181.8 112 85.7
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.4e-41 173.7 128 69.5
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.2e-38 162.5 104 81.7
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.1e-38 161.4 111 78.4
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 7.1e-38 161.4 106 80.2
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.1e-36 155.2 115 75.7
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 2.8e-34 149.4 168 47.0
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-33 147.1 83 88.0
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 9.0e-33 144.4 104 77.9
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.9e-30 136.7 81 85.2
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 2.7e-29 132.9 90 82.2
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 4.6e-29 132.1 164 43.3
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 1.0e-28 131.0 94 77.7
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.0e-28 131.0 120 63.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.3e-28 130.6 99 69.7
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 8.7e-28 127.9 171 40.4
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 2.5e-27 126.3 186 38.2
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 3.3e-27 125.9 94 63.8
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.8e-25 120.2 103 66.0
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 2.0e-24 116.7 77 77.9
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 2.2e-23 113.2 106 61.3
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.8e-17 93.6 64 73.4
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.0e-17 91.3 60 73.3
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 5.6e-11 72.0 114 43.9
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 9.6e-11 71.2 42 85.7
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.1e-10 70.1 113 44.2
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 4.8e-10 68.9 67 64.2
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.2e-10 68.6 113 43.4
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.2e-10 68.6 113 43.4
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.4e-09 66.6 113 42.5
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.1e-09 66.2 113 42.5
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.2e-06 55.8 36 77.8
Glyma.07G158050 Glycine max HOM05D004325 ORTHO05D022134 4.2e-06 55.8 36 77.8


User provided reference genes

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