Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 0.0e+00 1336.6 674 100.0
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 0.0e+00 1282.3 679 95.0
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 0.0e+00 1155.2 674 85.8
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 7.4e-252 874.0 680 66.2
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 3.7e-251 871.7 671 66.6
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 4.6e-246 854.7 664 66.3
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 2.3e-245 852.4 532 84.4
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 3.9e-245 851.7 656 66.0
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 7.4e-244 847.4 684 63.3
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 9.7e-244 847.0 621 67.1
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.7e-243 846.3 669 64.7
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 1.4e-242 843.2 667 66.3
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 6.9e-242 840.9 669 64.6
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 3.4e-241 838.6 671 63.5
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 3.8e-240 835.1 651 65.4
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.1e-239 833.6 669 64.0
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 1.5e-236 823.2 689 61.8
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 1.5e-236 823.2 652 64.6
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 4.4e-236 821.6 666 62.9
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 8.2e-235 817.4 653 63.6
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 2.4e-234 815.8 664 63.0
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 3.4e-233 812.0 661 63.2
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 4.2e-231 805.1 678 60.0
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 2.7e-230 802.4 667 61.6
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 3.6e-230 802.0 669 62.2
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 1.4e-229 800.0 670 61.8
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 1.8e-229 799.7 668 62.6
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 6.7e-229 797.7 677 61.7
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 1.1e-228 797.0 669 62.6
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 1.1e-228 797.0 666 60.1
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 2.6e-228 795.8 697 57.1
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 3.3e-228 795.4 672 61.6
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 4.4e-228 795.0 670 61.3
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 2.8e-227 792.3 682 61.9
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 8.2e-227 790.8 669 61.6
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 8.2e-227 790.8 679 60.4
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 4.1e-226 788.5 674 62.8
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 7.0e-226 787.7 671 61.8
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 2.0e-225 786.2 664 61.3
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 4.5e-225 785.0 663 60.2
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 7.7e-225 784.3 671 62.0
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.0e-224 783.9 669 61.0
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 2.2e-224 782.7 747 57.0
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 6.5e-224 781.2 646 62.7
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 1.5e-223 780.0 657 61.0
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.5e-223 780.0 749 53.5
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 5.5e-223 778.1 671 59.8
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 7.2e-223 777.7 664 59.9
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 9.4e-223 777.3 656 60.8
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 4.0e-221 771.9 651 60.5
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 4.4e-220 768.5 665 57.7
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 1.2e-217 760.4 659 59.2
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 1.6e-217 760.0 671 58.6
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 2.7e-217 759.2 671 58.3
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 3.8e-216 755.4 655 60.9
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 5.0e-216 755.0 667 59.2
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 1.1e-215 753.8 658 59.4
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 1.1e-215 753.8 664 58.0
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 3.2e-215 752.3 667 57.7
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 2.1e-214 749.6 669 58.4
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 2.7e-214 749.2 683 57.4
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 2.3e-213 746.1 648 59.9
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 4.4e-212 741.9 708 54.9
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 5.5e-207 724.9 632 58.4
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 1.6e-206 723.4 676 58.1
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 2.1e-206 723.0 675 55.4
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 6.1e-206 721.5 712 55.1
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 6.8e-205 718.0 683 54.3
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 2.0e-204 716.5 681 54.8
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 5.7e-204 714.9 669 56.1
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 9.8e-204 714.1 683 54.6
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.8e-202 709.9 667 55.0
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 4.5e-201 705.3 686 53.4
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 2.3e-200 703.0 686 54.5
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 3.8e-200 702.2 686 54.2
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 7.3e-199 698.0 659 57.1
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 3.6e-198 695.7 662 55.9
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 8.0e-198 694.5 683 53.6
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 1.4e-197 693.7 665 57.9
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 1.8e-197 693.3 684 53.8
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 2.3e-197 693.0 676 57.5
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 2.6e-196 689.5 684 53.5
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 4.0e-189 665.6 655 55.9
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 1.5e-188 663.7 514 64.8
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 2.1e-185 653.3 655 54.2
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 7.8e-185 651.4 518 67.4
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 1.8e-181 640.2 676 52.4
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 5.1e-176 622.1 651 51.9
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 1.4e-170 604.0 657 50.7
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 5.1e-168 595.5 524 60.3
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 3.3e-167 592.8 476 63.7
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 1.7e-163 580.5 677 46.7
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 7.6e-156 555.1 520 57.3
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 1.6e-150 537.3 653 48.4
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 7.6e-140 501.9 647 45.1
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 1.5e-124 451.1 404 58.7
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 2.6e-119 433.7 646 40.1
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 1.8e-112 411.0 663 38.0
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 1.5e-90 338.2 399 49.9
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 9.2e-85 318.9 249 65.5
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 4.6e-76 290.0 464 39.0
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.9e-69 268.1 515 35.7
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 2.1e-65 254.6 568 34.0
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 6.4e-54 216.5 146 68.5
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.3e-50 203.8 230 47.0
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.0e-48 197.2 190 51.1
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 3.8e-38 164.1 242 38.4
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.4e-37 162.2 404 32.7
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 4.9e-30 137.1 99 67.7
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 3.5e-28 131.0 92 64.1
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 3.1e-24 117.9 112 55.4
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 9.0e-24 116.3 156 45.5
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 4.6e-20 104.0 87 58.6
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 1.0e-19 102.8 121 48.8
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 9.0e-16 89.7 74 62.2
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 3.2e-13 81.3 91 49.5
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 3.2e-13 81.3 88 51.1
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 1.4e-11 75.9 65 56.9
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 1.7e-09 68.9 70 51.4


User provided reference genes

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