Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.7e-83 312.0 160 100.0
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 4.0e-63 245.0 158 79.1
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 6.4e-45 184.5 158 63.3
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 1.9e-44 183.0 156 60.9
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 3.0e-42 175.6 157 59.9
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 1.1e-41 173.7 159 59.1
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 7.3e-41 171.0 158 57.0
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 6.2e-40 167.9 158 58.9
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 6.2e-40 167.9 158 55.1
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 8.1e-40 167.5 158 57.0
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.4e-39 166.8 158 59.5
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 9.0e-39 164.1 157 56.7
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.2e-38 163.7 157 58.0
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.6e-38 162.5 157 54.8
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 4.4e-38 161.8 157 56.7
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.7e-37 159.8 158 53.8
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.1e-36 157.1 156 51.9
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 3.2e-36 155.6 160 53.1
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 5.4e-36 154.8 158 57.0
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 5.4e-36 154.8 157 54.1
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 1.6e-35 153.3 167 51.5
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.6e-35 153.3 157 54.8
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 6.0e-35 151.4 160 51.9
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.3e-34 149.4 156 51.9
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.1e-34 148.3 151 51.0
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 5.1e-34 148.3 159 56.0
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 6.6e-34 147.9 151 51.0
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.6e-34 147.9 151 51.0
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 6.6e-34 147.9 156 51.9
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 2.5e-33 146.0 157 51.6
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.3e-33 145.6 159 51.6
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.3e-33 145.6 151 51.0
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 4.3e-33 145.2 158 49.4
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 9.6e-33 144.1 159 50.9
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.6e-32 143.3 156 48.7
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 2.8e-32 142.5 157 52.2
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 2.8e-32 142.5 158 51.3
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 6.2e-32 141.4 156 50.6
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 1.4e-31 140.2 152 48.0
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.4e-31 139.4 160 50.0
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.4e-31 139.4 160 50.0
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.4e-31 139.4 153 52.9
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 9.0e-31 137.5 158 51.9
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 9.0e-31 137.5 155 45.2
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.2e-30 137.1 164 49.4
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.0e-30 136.3 163 50.3
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 2.0e-30 136.3 157 45.2
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 3.4e-30 135.6 153 51.6
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 3.4e-30 135.6 155 45.2
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 4.5e-30 135.2 136 59.6
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 7.6e-30 134.4 152 51.3
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.3e-29 133.7 151 51.7
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 4.9e-29 131.7 151 46.4
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 4.9e-29 131.7 151 46.4
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 8.4e-29 131.0 134 50.0
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 2.4e-28 129.4 134 49.3
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 2.7e-27 125.9 148 46.6
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 4.6e-27 125.2 134 51.5
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 4.6e-27 125.2 157 47.1
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 6.0e-27 124.8 155 45.8
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 7.9e-27 124.4 156 48.1
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 1.0e-26 124.0 120 56.7
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.3e-26 123.6 136 50.7
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.3e-26 123.6 159 47.8
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.3e-26 123.6 155 46.5
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.8e-26 123.2 138 50.7
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.8e-26 123.2 155 46.5
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.7e-26 121.3 156 48.1
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 6.7e-26 121.3 145 51.0
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 5.6e-25 118.2 157 46.5
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 7.4e-25 117.9 158 45.6
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 7.4e-25 117.9 128 50.0
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 7.4e-25 117.9 135 48.1
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 9.6e-25 117.5 153 47.1
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.6e-24 116.7 155 46.5
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.7e-24 115.5 153 47.7
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 4.8e-24 115.2 151 43.7
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 6.2e-24 114.8 124 49.2
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 6.2e-24 114.8 121 51.2
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.4e-23 113.6 153 44.4
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 1.8e-23 113.2 160 45.0
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.1e-23 112.5 160 45.0
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.0e-23 112.1 128 46.1
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 6.9e-23 111.3 120 50.8
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 1.2e-22 110.5 135 44.4
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.5e-22 110.2 162 43.2
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 5.8e-22 108.2 120 49.2
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.3e-21 107.1 155 40.0
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.2e-21 106.3 158 41.1
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.9e-21 105.9 134 50.0
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.9e-21 105.9 158 41.1
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 8.4e-21 104.4 132 47.0
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 3.2e-20 102.4 158 41.1
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.5e-20 101.7 120 45.8
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 1.2e-19 100.5 160 41.2
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.2e-19 100.5 135 40.7
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 2.1e-19 99.8 119 42.9
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.5e-19 99.0 157 45.2
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.5e-19 99.0 127 42.5
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.6e-19 98.6 157 45.2
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 4.6e-19 98.6 149 36.9
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 4.6e-19 98.6 142 42.3
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-18 97.4 87 55.2
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-18 97.1 110 49.1
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 1.3e-18 97.1 138 42.8
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 2.3e-18 96.3 127 41.7
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.3e-18 96.3 145 40.7
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-18 96.3 109 48.6
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 3.0e-18 95.9 110 47.3
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 3.9e-18 95.5 138 37.0
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 3.9e-18 95.5 158 39.2
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 3.9e-18 95.5 110 48.2
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 3.9e-18 95.5 110 48.2
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 3.9e-18 95.5 110 48.2
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 3.9e-18 95.5 110 48.2
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 8.7e-18 94.4 152 39.5
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 8.7e-18 94.4 131 42.7
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 8.7e-18 94.4 142 41.5
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 1.1e-17 94.0 128 42.2
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 1.1e-17 94.0 132 43.2
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.5e-17 93.6 120 46.7
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 1.5e-17 93.6 107 47.7
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 3.3e-17 92.4 132 43.2
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.3e-17 92.4 99 49.5
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 7.4e-17 91.3 129 41.1
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 7.4e-17 91.3 110 46.4
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 7.4e-17 91.3 110 46.4
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 9.6e-17 90.9 157 40.1
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 9.6e-17 90.9 127 40.2
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.6e-17 90.9 148 39.2
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-16 90.5 110 47.3
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-16 90.5 110 46.4
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 3.7e-16 89.0 105 46.7
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 4.8e-16 88.6 144 37.5
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 4.8e-16 88.6 159 37.7
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.4e-15 87.0 162 40.1
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 1.4e-15 87.0 137 42.3
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-15 86.7 146 39.7
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 2.4e-15 86.3 145 35.9
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 2.4e-15 86.3 145 35.9
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 4.0e-15 85.5 121 42.1
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 4.0e-15 85.5 150 37.3
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 6.9e-15 84.7 117 44.4
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.9e-15 84.7 146 39.0
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.5e-14 83.6 108 50.9
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-14 83.6 154 37.7
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 2.0e-14 83.2 145 35.9
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 4.5e-14 82.0 122 41.8
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 4.5e-14 82.0 122 41.8
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 4.5e-14 82.0 122 41.8
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 4.5e-14 82.0 131 42.7
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 1.3e-13 80.5 172 34.9
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-13 80.5 151 37.7
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 1.7e-13 80.1 98 45.9
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 1.7e-13 80.1 98 45.9
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 2.2e-13 79.7 121 40.5
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 4.9e-13 78.6 145 35.2
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 4.9e-13 78.6 134 37.3
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 6.5e-13 78.2 135 37.0
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 6.5e-13 78.2 150 33.3
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.4e-12 77.0 90 43.3
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 1.9e-12 76.6 154 30.5
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 2.5e-12 76.3 129 38.0
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 5.5e-12 75.1 162 42.0
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.1e-12 74.7 155 36.1
MELO3C006672.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.2e-11 73.9 121 44.6
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 1.2e-11 73.9 124 37.9
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 4.6e-11 72.0 130 36.9
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 1.0e-10 70.9 128 36.7
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 1.0e-10 70.9 128 36.7
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 1.0e-10 70.9 132 38.6
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 1.3e-10 70.5 129 36.4
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.3e-10 69.7 194 29.9
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 3.0e-10 69.3 120 31.7
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 6.7e-10 68.2 109 41.3
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.5e-09 67.0 106 41.5
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.5e-09 67.0 105 42.9
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 2.5e-09 66.2 133 38.3
Hma1.2p1_0078F.1_g040470 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 3.3e-09 65.9 157 35.7
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 4.3e-09 65.5 151 36.4
FvH4_4g18450 Fragaria vesca HOM05D057627 ORTHO05D046375 5.7e-09 65.1 134 33.6
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.6e-08 63.5 133 37.6
FAN12G3918 Fragaria x ananassa HOM05D057627 ORTHO05D046375 4.1e-07 58.9 134 32.8
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.1e-07 58.9 173 31.2
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 6.9e-07 58.2 132 37.9
DCAR_030519 Daucus carota HOM05D000739 ORTHO05D009240 5.9e-06 55.1 113 32.7
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.9e-06 55.1 154 29.2
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 5.9e-06 55.1 121 33.1


User provided reference genes

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