Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1770.4 868 100.0
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1698.7 893 94.6
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1690.2 868 95.9
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1526.1 869 87.0
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1341.6 878 75.9
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1340.9 878 75.9
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1329.3 878 75.1
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1328.5 880 75.3
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1322.8 889 73.8
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1305.0 886 73.9
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1304.7 881 73.0
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1298.5 875 72.9
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1297.3 886 72.8
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1297.0 889 72.7
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1296.2 878 72.9
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1294.3 878 73.5
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1281.5 877 73.3
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1281.2 872 73.3
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1278.5 877 72.9
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1275.8 880 72.4
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1273.5 863 73.7
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1271.1 863 73.6
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1266.5 863 73.5
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1263.1 916 69.2
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1258.0 879 72.6
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1255.0 852 73.4
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1253.0 878 71.4
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1249.6 912 68.5
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1226.5 892 69.5
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1226.1 892 69.4
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1221.8 877 70.7
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1220.3 858 71.6
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1208.0 886 70.5
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1204.5 859 69.6
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1198.0 860 69.8
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1193.7 868 69.8
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1191.4 851 69.6
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1191.4 882 68.0
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1191.0 876 69.1
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1187.2 861 69.5
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1182.5 885 67.9
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1181.0 885 67.8
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1178.3 851 68.9
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1175.2 851 68.7
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1173.7 889 67.6
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1171.8 1006 61.5
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1170.6 880 68.2
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1170.2 885 67.3
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1169.5 792 73.1
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1169.1 858 69.6
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1165.6 950 64.4
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1157.5 839 69.2
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1153.3 852 67.7
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1149.8 859 67.9
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1144.4 884 66.0
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1143.3 859 67.9
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 0.0e+00 1137.1 855 67.8
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 0.0e+00 1132.1 835 69.1
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1124.4 856 68.6
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1112.4 892 64.2
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 0.0e+00 1110.9 927 63.2
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 0.0e+00 1108.2 858 66.2
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 0.0e+00 1102.4 812 69.5
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1097.0 873 63.8
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 0.0e+00 1087.0 852 65.1
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 0.0e+00 1085.9 854 64.9
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 1.2e-311 1073.2 856 64.8
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 1.2e-311 1072.8 879 63.7
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 2.0e-310 1068.9 867 64.5
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 2.9e-309 1065.1 874 62.8
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 2.4e-303 1045.4 865 62.5
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 3.8e-301 1038.1 844 63.9
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 1.0e-298 1030.0 876 62.2
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 2.0e-297 1025.8 860 62.0
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 4.4e-297 1024.6 825 64.4
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 1.4e-290 1003.0 856 61.1
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 4.8e-288 994.6 849 61.0
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 4.1e-287 991.5 852 60.8
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 7.0e-287 990.7 856 60.5
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 1.7e-285 986.1 870 59.3
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 8.5e-285 983.8 874 59.7
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 4.0e-282 974.9 873 59.7
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 5.9e-278 961.1 853 59.9
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 5.9e-278 961.1 853 59.9
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 1.9e-276 956.1 852 59.6
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 2.0e-273 946.0 852 59.5
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.7e-272 943.0 852 59.2
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 2.7e-270 935.6 850 58.6
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 1.1e-268 930.2 853 58.6
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 4.3e-268 928.3 845 58.6
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 7.0e-263 911.0 840 57.4
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 5.9e-262 907.9 784 61.4
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.5e-252 876.7 850 56.4
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 5.1e-237 825.1 784 56.2
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 5.1e-229 798.5 786 56.9
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 2.6e-225 786.2 887 51.7
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 7.9e-222 774.6 718 57.4
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.7e-203 712.6 923 46.6
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.1e-202 711.1 526 68.4
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.0e-200 704.5 921 46.1
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 3.3e-188 662.9 611 57.0
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.4e-181 641.0 398 76.9
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 4.7e-174 615.9 860 43.0
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 1.8e-173 614.0 369 80.2
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 1.8e-165 587.4 412 70.4
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 1.0e-157 561.6 473 64.7
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 4.0e-157 559.7 436 65.4
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 7.8e-153 545.4 388 70.9
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 1.4e-125 454.9 502 50.8
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.5e-111 408.3 276 69.6
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 1.6e-94 351.7 367 52.6
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.5e-92 345.1 550 41.1
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.5e-92 345.1 550 41.1
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 3.8e-83 313.9 175 85.7
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 5.5e-82 310.1 283 54.4
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.2e-76 292.4 282 57.4
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.4e-76 290.8 382 47.9
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.2e-75 288.1 151 90.7
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 3.8e-75 287.3 855 29.5
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 3.0e-64 251.1 137 87.6
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.3e-62 245.7 145 84.1
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.4e-56 225.7 137 77.4
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.8e-51 207.6 117 77.8
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.7e-47 193.7 297 37.4
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 9.5e-42 176.4 195 43.1
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.6e-36 159.1 186 52.2
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 2.7e-28 131.7 85 77.6
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 3.9e-27 127.9 264 31.8
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 1.1e-24 119.8 128 49.2
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 1.2e-23 116.3 161 41.0
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 1.8e-16 92.4 58 70.7
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.0e-16 91.3 81 60.5
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 2.6e-15 88.6 128 40.6
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 4.4e-15 87.8 210 28.6
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.9e-14 85.1 55 74.5
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 5.4e-13 80.9 64 59.4
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 3.5e-12 78.2 61 60.7
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 6.0e-12 77.4 118 39.8
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 1.6e-09 69.3 33 87.9
HanXRQChr09g0244011 Helianthus annuus HOM05D005283 ORTHO05D006769 4.9e-06 57.8 47 53.2
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 8.4e-06 57.0 37 67.6


User provided reference genes

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