Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 2.6e-138 495.4 241 100.0
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 6.5e-134 480.7 241 96.3
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 2.8e-129 465.3 241 91.7
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 1.8e-107 392.9 248 79.0
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 4.9e-73 278.5 231 57.1
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 1.9e-72 276.6 236 58.1
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 5.4e-72 275.0 241 55.6
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 2.1e-71 273.1 241 55.2
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 3.5e-71 272.3 238 55.9
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 4.6e-71 271.9 230 57.4
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 2.3e-70 269.6 235 57.4
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 3.9e-70 268.9 238 54.6
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 1.9e-69 266.5 232 55.2
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 6.2e-68 261.5 222 56.8
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 1.1e-67 260.8 237 53.6
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.4e-67 260.4 237 53.2
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 1.8e-67 260.0 243 55.6
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 3.1e-67 259.2 237 53.2
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 1.5e-66 256.9 241 53.5
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 3.4e-66 255.8 234 54.3
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 7.6e-66 254.6 235 50.2
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 1.3e-65 253.8 246 52.4
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 1.3e-65 253.8 231 55.0
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 1.7e-65 253.4 227 55.9
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 3.8e-65 252.3 226 55.3
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 4.9e-65 251.9 243 50.2
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 4.9e-65 251.9 240 51.2
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 8.4e-65 251.1 236 52.1
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 8.4e-65 251.1 235 50.2
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 1.1e-64 250.8 235 54.5
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 1.1e-64 250.8 223 56.1
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 5.4e-64 248.4 258 50.0
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 1.6e-63 246.9 227 52.9
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 2.1e-63 246.5 234 52.1
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 6.0e-63 245.0 246 50.8
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 7.9e-63 244.6 249 49.8
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 3.9e-62 242.3 236 50.4
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 5.1e-62 241.9 236 50.8
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 1.5e-61 240.4 245 48.2
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 1.9e-61 240.0 234 50.4
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 7.4e-61 238.0 231 50.6
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 9.6e-61 237.7 230 49.6
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 1.3e-60 237.3 238 50.0
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 4.8e-60 235.3 235 50.6
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 8.1e-60 234.6 240 47.9
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.4e-59 233.8 229 51.5
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 1.8e-59 233.4 244 47.5
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 4.0e-59 232.3 231 51.1
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 4.0e-59 232.3 237 51.1
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 9.0e-59 231.1 250 46.4
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 1.2e-58 230.7 250 44.8
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 2.0e-58 229.9 242 46.3
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 7.6e-58 228.0 231 48.5
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 7.6e-58 228.0 236 48.3
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.3e-57 227.3 229 50.7
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 3.8e-57 225.7 239 47.7
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 4.9e-57 225.3 245 44.9
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 1.4e-56 223.8 245 44.5
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 1.4e-56 223.8 234 48.7
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 2.4e-56 223.0 231 47.6
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 4.2e-56 222.2 236 47.5
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 1.3e-54 217.2 234 46.6
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 6.7e-54 214.9 240 47.5
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 8.7e-54 214.5 228 46.5
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 1.9e-53 213.4 250 44.0
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 1.6e-52 210.3 220 47.3
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 4.8e-52 208.8 250 42.0
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.4e-51 206.5 227 48.9
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 2.4e-51 206.5 242 43.4
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 9.0e-51 204.5 223 49.8
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 1.5e-50 203.8 192 48.4
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 3.4e-50 202.6 241 45.6
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 3.4e-50 202.6 223 49.3
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 1.3e-49 200.7 227 46.3
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 2.2e-49 199.9 226 44.7
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 2.9e-49 199.5 233 44.2
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 2.5e-48 196.4 226 45.6
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 2.5e-48 196.4 226 45.6
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 2.5e-48 196.4 227 44.9
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 2.1e-47 193.4 236 41.5
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 2.7e-47 193.0 231 43.7
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 6.0e-47 191.8 227 42.7
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 1.0e-46 191.0 226 44.7
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 1.3e-46 190.7 234 44.9
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 1.8e-46 190.3 226 44.7
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 1.8e-46 190.3 226 44.7
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 3.9e-46 189.1 227 43.6
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 8.7e-46 188.0 175 50.3
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 1.9e-45 186.8 225 44.9
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 3.3e-45 186.0 225 41.8
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.6e-44 183.7 200 46.5
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 3.7e-44 182.6 170 52.9
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 4.8e-44 182.2 224 42.0
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.2e-41 173.3 230 44.3
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 2.2e-41 173.3 234 39.7
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 2.1e-39 166.8 154 51.3
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 1.3e-38 164.1 293 33.1
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 2.5e-37 159.8 297 32.0
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 2.5e-37 159.8 163 44.8
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 4.1e-35 152.5 172 47.1
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 1.5e-34 150.6 233 37.8
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 2.5e-32 143.3 255 32.9
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 1.1e-29 134.4 152 45.4
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 4.8e-28 129.0 227 30.8
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 8.2e-28 128.3 152 42.8
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 1.4e-27 127.5 152 41.4
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 4.2e-24 115.9 87 59.8
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 4.7e-23 112.5 88 56.8
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 4.7e-23 112.5 141 40.4
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 6.3e-20 102.1 173 32.9
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 4.1e-19 99.4 118 50.8
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 5.3e-19 99.0 139 37.4
Duzib212G0132 Durio zibethinus HOM05D006775 ORTHO05D008344 1.7e-17 94.0 93 49.5
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.1e-16 91.3 76 59.2
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 3.2e-16 89.7 67 58.2
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 9.4e-16 88.2 86 44.2
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 3.6e-15 86.3 88 46.6
PSO210G2970 Papaver somniferum HOM05D006775 ORTHO05D008344 1.0e-14 84.7 111 42.3
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 8.8e-14 81.6 135 37.0
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 3.1e-11 73.2 84 41.7
Haze_01266 Corylus avellana HOM05D006775 ORTHO05D008344 1.3e-09 67.8 67 53.7


User provided reference genes

Program Settings