Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1901.3 963 100.0
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1793.9 963 94.0
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1710.7 952 91.9
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1629.0 844 98.0
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1616.3 978 84.3
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1605.1 973 83.9
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1602.0 975 83.6
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1601.6 968 84.5
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1599.3 969 84.4
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1598.2 910 88.7
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1592.0 967 84.3
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1590.1 909 87.5
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1588.2 895 88.5
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1586.6 907 87.7
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1586.2 979 83.1
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1584.3 971 83.1
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1583.5 890 89.0
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1582.0 962 84.2
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1582.0 895 88.3
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1580.8 974 82.8
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1580.1 976 83.0
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1579.3 944 84.2
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1574.3 962 82.5
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1572.8 968 83.0
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1572.4 907 87.0
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1572.0 915 86.4
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1566.6 974 82.5
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1566.6 994 80.9
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1563.5 907 86.5
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1563.5 956 81.8
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1563.1 909 86.4
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1559.3 975 80.6
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1558.9 970 82.0
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1557.7 983 81.0
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1557.3 875 89.1
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1557.3 970 81.8
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1556.2 975 81.7
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1556.2 891 88.0
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1553.1 910 85.7
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1552.0 957 81.6
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1551.6 985 79.8
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1551.6 985 79.8
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1550.8 882 87.4
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1550.4 889 86.7
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1547.3 985 79.7
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1544.6 950 82.6
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1543.9 875 87.3
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1542.3 976 80.8
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1541.2 889 86.5
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1540.8 898 86.3
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1538.1 900 85.8
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1537.7 898 86.1
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1537.3 977 79.5
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1536.9 994 79.8
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1535.8 888 86.0
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1535.0 967 80.2
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1529.6 890 85.3
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 952 80.9
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1527.3 898 85.6
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1524.2 889 85.0
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1524.2 976 80.0
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1522.7 937 81.2
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1522.3 874 86.5
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1520.8 878 85.4
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1518.1 874 86.2
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1516.1 938 82.7
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1514.2 873 86.0
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1512.3 858 87.3
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1510.7 862 87.1
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1501.9 874 85.5
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1501.9 935 82.5
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1501.5 873 85.6
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1498.8 943 80.4
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1498.8 941 79.9
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1498.4 874 85.5
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1496.9 944 80.3
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1495.3 934 82.3
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 880 85.9
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1493.4 943 80.1
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1492.6 891 82.3
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1492.6 945 78.8
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1491.9 858 86.8
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1489.2 874 84.4
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1487.6 925 81.1
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 948 79.2
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 857 86.7
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1484.2 887 84.8
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1484.2 874 83.4
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1481.1 966 77.8
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1481.1 941 79.1
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1481.1 941 79.1
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1480.7 893 82.1
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1476.1 843 87.3
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1475.3 964 77.4
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1473.8 903 82.2
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1473.4 857 86.3
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1473.0 944 78.5
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1473.0 879 82.4
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1471.4 964 77.1
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1470.7 900 81.4
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1470.7 964 77.0
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1470.7 875 83.3
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1468.8 873 83.3
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1463.4 873 82.7
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1456.4 902 81.2
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1454.9 930 78.5
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1443.3 858 83.2
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1442.9 899 78.5
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1432.2 844 83.9
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1432.2 1031 73.3
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1428.7 954 77.9
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1427.2 894 79.0
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1419.4 964 76.3
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1406.3 872 78.7
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1406.0 886 78.2
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1401.7 882 80.7
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1399.0 860 80.3
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1389.0 774 89.5
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1369.0 823 82.5
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1367.4 874 79.7
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1361.7 803 82.9
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1360.9 902 76.8
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1359.4 902 77.4
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1334.7 803 83.9
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1312.7 886 77.8
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1308.9 880 78.0
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1297.7 737 87.4
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1275.4 875 74.9
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1233.4 730 82.6
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1218.0 779 78.2
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1203.3 857 69.0
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1202.2 875 68.1
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1201.0 874 70.9
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1100.9 633 85.6
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.1e-304 1050.0 883 60.4
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 1.0e-302 1043.5 581 88.0
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 1.3e-273 946.8 564 83.9
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 2.3e-259 899.4 908 54.3
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.0e-218 763.5 544 73.7
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.9e-216 756.9 521 75.8
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.5e-216 756.5 505 78.0
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.0e-195 685.3 451 78.7
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 2.6e-194 683.3 744 51.9
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 8.8e-190 668.3 396 84.3
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 1.0e-166 591.7 467 68.3
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 3.9e-161 573.2 338 83.4
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 4.4e-141 506.5 296 84.8
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 2.2e-140 504.2 391 68.0
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.0e-114 416.4 423 55.6
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 3.9e-105 387.1 320 66.2
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 3.2e-91 340.9 232 75.0
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 4.6e-90 337.0 264 67.4
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 5.9e-69 266.9 227 64.3
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 2.6e-64 251.5 216 62.0
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 3.0e-57 228.0 151 74.8
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 8.9e-49 199.9 119 79.8
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 1.5e-43 182.6 268 43.3
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.4e-38 165.2 114 71.1
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 1.2e-32 146.4 85 83.5
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 3.2e-30 138.3 83 80.7
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 2.3e-28 132.1 90 70.0
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 1.2e-26 126.3 81 80.2
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 4.4e-24 117.9 95 66.3
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 2.2e-23 115.5 130 53.1
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 8.4e-23 113.6 454 27.5
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 1.6e-18 99.4 56 78.6
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 2.6e-16 92.0 60 70.0
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.3e-12 79.7 57 71.9
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 4.3e-11 74.7 51 70.6
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 5.6e-11 74.3 49 73.5
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 4.0e-09 68.2 36 83.3
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 4.0e-09 68.2 46 76.1
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.6e-08 65.5 43 72.1
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 3.4e-08 65.1 43 74.4
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 4.5e-08 64.7 42 69.0


User provided reference genes

Program Settings