Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 5.1e-162 574.3 284 100.0
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 3.7e-136 488.4 259 92.7
ClCG05G005110 Citrullus lanatus HOM05D007633 ORTHO05D008817 1.7e-77 293.5 276 61.6
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 4.4e-73 278.9 266 58.6
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 8.4e-64 248.1 266 51.9
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 6.0e-62 241.9 266 51.1
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 1.6e-59 233.8 257 50.6
RcHm_v2.0_Chr4g0415951 Rosa chinensis HOM05D007633 ORTHO05D008817 9.0e-58 228.0 269 49.4
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 1.2e-57 227.6 242 52.1
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 9.9e-57 224.6 265 47.9
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 9.9e-57 224.6 260 49.2
FAN02G3335 Fragaria x ananassa HOM05D007633 ORTHO05D008817 3.8e-56 222.6 274 47.8
FAN22G0362 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.1e-55 221.1 274 48.2
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 1.9e-55 220.3 257 49.0
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 9.3e-55 218.0 256 48.4
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 9.3e-55 218.0 250 49.2
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 1.3e-53 214.2 260 46.9
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 1.3e-53 214.2 257 49.0
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 1.3e-53 214.2 263 48.3
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 6.6e-53 211.8 237 48.9
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 1.5e-52 210.7 260 45.8
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 1.5e-52 210.7 257 47.9
Hma1.2p1_0745F.1_g212150 Hydrangea macrophylla HOM05D007633 ORTHO05D008817 4.3e-52 209.1 256 46.5
FvH4_4g16290 Fragaria vesca HOM05D007633 ORTHO05D008817 9.6e-52 208.0 274 46.7
FAN12G0707 Fragaria x ananassa HOM05D007633 ORTHO05D008817 9.6e-52 208.0 274 46.7
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 1.3e-51 207.6 279 45.5
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 2.8e-51 206.5 292 43.2
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 1.1e-50 204.5 265 46.0
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 5.3e-50 202.2 270 42.2
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 9.0e-50 201.4 259 46.7
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 9.0e-50 201.4 239 49.4
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 1.5e-49 200.7 252 46.4
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 2.2e-48 196.8 246 47.6
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 8.4e-48 194.9 161 59.6
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 1.9e-47 193.7 240 46.7
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 4.6e-46 189.1 246 44.7
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 1.8e-45 187.2 243 46.5
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 3.9e-45 186.0 267 42.7
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 8.7e-45 184.9 261 42.5
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 1.9e-44 183.7 251 45.4
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 3.3e-44 183.0 228 42.5
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 4.3e-44 182.6 244 45.5
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 4.3e-44 182.6 259 43.2
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 7.4e-44 181.8 259 40.9
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 2.8e-43 179.9 255 42.7
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 1.1e-42 177.9 238 42.4
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 3.4e-41 172.9 166 55.4
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 4.5e-41 172.6 254 42.9
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 2.2e-40 170.2 246 39.4
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 3.8e-40 169.5 248 42.3
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 4.9e-40 169.1 237 42.2
vmacro15349 Vaccinium macrocarpon HOM05D007633 ORTHO05D008817 2.7e-38 163.3 261 38.3
FAN07G1430 Fragaria x ananassa HOM05D007633 ORTHO05D008817 7.9e-38 161.8 209 48.8
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 1.0e-37 161.4 222 42.3
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 1.1e-36 157.9 260 41.5
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 9.6e-36 154.8 258 39.5
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 1.3e-35 154.5 272 39.0
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 1.4e-34 151.0 214 39.3
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 1.4e-34 151.0 236 39.8
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 2.2e-32 143.7 242 38.0
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 2.9e-32 143.3 242 37.6
CiPaw.01G167500 Carya illinoinensis HOM05D007633 ORTHO05D008817 2.5e-31 140.2 262 37.4
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 2.5e-31 140.2 242 37.2
CDE07G1037 Ceratophyllum demersum HOM05D007633 ORTHO05D008817 7.2e-31 138.7 156 46.2
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 4.6e-30 136.0 246 35.8
Ah.04g154590 Amaranthus hybridus HOM05D007633 ORTHO05D008817 1.8e-29 134.0 247 36.4
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 2.3e-29 133.7 157 42.7
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 9.7e-28 128.3 259 35.1
Peaxi162Scf00192g01119 Petunia axillaris HOM05D007633 ORTHO05D008817 2.2e-27 127.1 252 34.5
Peaxi162Scf00092g00615 Petunia axillaris HOM05D007633 ORTHO05D008817 1.2e-25 121.3 248 35.1
Solyc06g054140.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 2.0e-25 120.6 157 40.1
Nitab4.5_0008118g0020 Nicotiana tabacum HOM05D007633 ORTHO05D008817 3.4e-25 119.8 255 32.5
Hund12119 Selenicereus undatus HOM05D007633 ORTHO05D008817 1.0e-24 118.2 234 33.3
PSO210G6592 Papaver somniferum HOM05D007633 ORTHO05D008817 1.7e-24 117.5 239 33.1
PSO761G0330 Papaver somniferum HOM05D007633 ORTHO05D008817 2.9e-24 116.7 249 33.7
Lsat_1_v5_gn_8_155361 Lactuca sativa HOM05D007633 ORTHO05D008817 8.5e-24 115.2 135 42.2
SalBow3G0862 Salvia bowleyana HOM05D007633 ORTHO05D008817 7.2e-23 112.1 252 34.9
arahy.Tifrunner.gnm1.ann1.5LNY8Z Arachis hypogaea HOM05D007633 ORTHO05D008817 1.2e-22 111.3 173 42.8
PSO761G0485 Papaver somniferum HOM05D007633 ORTHO05D008817 1.2e-22 111.3 242 32.2
PSO210G0191 Papaver somniferum HOM05D007633 ORTHO05D008817 2.7e-22 110.2 265 32.5
Nitab4.5_0001920g0040 Nicotiana tabacum HOM05D007633 ORTHO05D008817 3.6e-22 109.8 192 35.4
VMungo1215G1192 Vigna mungo HOM05D007633 ORTHO05D008817 3.6e-22 109.8 273 34.4
arahy.Tifrunner.gnm1.ann1.VQRK5I Arachis hypogaea HOM05D007633 ORTHO05D008817 1.0e-21 108.2 173 42.2
Nitab4.5_0000321g0150 Nicotiana tabacum HOM05D007633 ORTHO05D008817 5.1e-21 105.9 159 35.8
AUR62034710 Chenopodium quinoa HOM05D007633 ORTHO05D008817 1.1e-20 104.8 188 37.2
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 3.3e-20 103.2 240 33.8
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 8.2e-19 98.6 268 33.6
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 4.1e-18 96.3 241 32.4
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 4.5e-17 92.8 305 29.8
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 7.7e-17 92.0 175 36.0
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 2.2e-16 90.5 244 32.4
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 2.9e-16 90.1 264 31.1
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 3.8e-16 89.7 253 31.2
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 1.4e-15 87.8 222 32.0
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 1.4e-15 87.8 222 32.0
AUR62043551 Chenopodium quinoa HOM05D007633 ORTHO05D008817 3.2e-15 86.7 191 36.6
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 1.6e-14 84.3 226 31.0
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 1.6e-14 84.3 226 31.0
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 7.9e-14 82.0 226 30.5
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 7.9e-14 82.0 268 30.2
MD13G1194600 Malus domestica HOM05D007633 ORTHO05D008817 1.8e-13 80.9 161 34.8
Sp1g04300 Schrenkiella parvula HOM05D012198 ORTHO05D008817 1.8e-13 80.9 263 31.2
EL10Ac3g06495 Beta vulgaris HOM05D007633 ORTHO05D008817 3.3e-12 76.6 262 30.2
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 4.4e-12 76.3 143 35.0
PGSC0003DMG400016306 Solanum tuberosum HOM05D007633 ORTHO05D008817 2.8e-11 73.6 103 40.8
TWI73G0180 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 2.8e-11 73.6 100 44.0
MD07G1251800 Malus domestica HOM05D007633 ORTHO05D008817 2.4e-10 70.5 74 54.1
DCAR_030642 Daucus carota HOM05D007633 ORTHO05D008817 3.8e-08 63.2 74 47.3
Os10g0430800 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 5.0e-08 62.8 255 24.7
MD13G1194700 Malus domestica HOM05D007633 ORTHO05D008817 6.5e-08 62.4 75 50.7
Sabra08G0117600 Salix brachista HOM05D007633 ORTHO05D008817 3.2e-07 60.1 74 43.2
Cpa.g.sc58.92 Carica papaya HOM05D000003 ORTHO05D000004 5.5e-07 59.3 49 55.1
Os10g0430700 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 7.2e-07 58.9 210 23.8
MD13G1194800 Malus domestica HOM05D007633 ORTHO05D008817 3.6e-06 56.6 52 55.8


User provided reference genes

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