Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 1.3e-225 786.2 426 100.0
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 7.6e-194 680.6 429 88.8
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 9.9e-186 653.7 426 86.4
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 5.7e-125 451.8 442 65.2
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 5.4e-107 392.1 412 61.2
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 5.5e-59 232.6 464 41.4
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 8.2e-55 218.8 488 38.3
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 5.8e-53 212.6 522 37.7
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.0e-52 211.8 427 40.7
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 2.9e-52 210.3 487 39.0
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 2.9e-52 210.3 403 39.5
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.1e-51 208.4 424 40.1
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 3.2e-51 206.8 482 37.3
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 9.3e-51 205.3 431 39.4
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 9.3e-51 205.3 522 35.6
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 6.1e-50 202.6 504 36.1
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 6.1e-50 202.6 420 39.0
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 1.3e-49 201.4 590 33.9
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 3.0e-49 200.3 447 37.6
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 2.5e-48 197.2 483 35.6
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 1.3e-47 194.9 445 38.0
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 1.6e-47 194.5 440 38.6
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 1.4e-46 191.4 483 35.4
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 2.4e-46 190.7 507 35.9
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 3.1e-46 190.3 418 37.8
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 4.1e-46 189.9 437 38.4
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 5.3e-46 189.5 460 35.2
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 6.9e-46 189.1 456 39.3
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 9.0e-46 188.7 552 35.1
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 1.5e-45 188.0 434 37.1
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 2.0e-45 187.6 584 33.0
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 3.4e-45 186.8 510 34.1
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 1.3e-44 184.9 460 34.8
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 2.2e-44 184.1 431 35.3
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 1.1e-43 181.8 392 38.0
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 1.1e-43 181.8 443 38.8
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 3.2e-43 180.3 432 37.3
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 5.5e-43 179.5 434 37.8
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 5.5e-43 179.5 439 36.9
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.6e-42 177.9 435 36.6
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.6e-42 177.9 426 37.8
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 3.6e-42 176.8 433 37.2
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 3.6e-42 176.8 503 33.8
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 4.6e-42 176.4 442 37.8
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 7.9e-42 175.6 192 53.1
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 2.3e-41 174.1 364 42.3
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 3.0e-41 173.7 174 59.2
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 3.9e-41 173.3 420 36.7
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 6.7e-41 172.6 492 35.8
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 6.7e-41 172.6 494 34.8
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 8.8e-41 172.2 421 35.2
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 2.0e-40 171.0 446 38.1
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 2.5e-40 170.6 462 34.0
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 1.7e-39 167.9 438 34.9
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 2.2e-39 167.5 438 34.5
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 8.2e-39 165.6 439 36.2
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 1.1e-38 165.2 510 32.4
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 1.4e-38 164.9 209 48.8
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 4.1e-38 163.3 442 36.2
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 9.1e-38 162.2 436 35.1
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 1.2e-37 161.8 482 32.0
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 1.5e-37 161.4 447 35.1
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 2.0e-37 161.0 441 33.8
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 3.4e-37 160.2 421 34.2
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 7.7e-37 159.1 420 33.6
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 1.0e-36 158.7 444 34.2
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 1.3e-36 158.3 450 34.4
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 2.2e-36 157.5 420 37.1
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 2.9e-36 157.1 427 34.0
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 5.0e-36 156.4 414 36.5
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 8.5e-36 155.6 421 35.6
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 8.5e-36 155.6 428 34.6
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 3.2e-35 153.7 360 36.9
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 4.2e-35 153.3 437 35.9
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 4.2e-35 153.3 415 35.7
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 7.2e-35 152.5 428 36.2
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 9.4e-35 152.1 466 35.0
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 9.4e-35 152.1 453 35.5
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.2e-34 151.8 425 35.1
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 2.7e-34 150.6 399 39.8
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 3.6e-34 150.2 392 36.5
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 1.1e-32 145.2 578 33.6
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 2.0e-32 144.4 127 64.6
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 2.0e-32 144.4 426 34.5
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 3.3e-32 143.7 167 51.5
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 4.4e-32 143.3 428 34.6
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 4.4e-32 143.3 116 63.8
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 9.7e-32 142.1 117 68.4
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 1.3e-31 141.7 87 77.0
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 1.3e-31 141.7 287 39.7
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 6.3e-31 139.4 419 37.2
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 8.2e-31 139.0 456 33.8
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 1.4e-30 138.3 390 34.4
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 1.8e-30 137.9 126 61.1
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 1.8e-30 137.9 126 61.1
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 1.8e-30 137.9 399 34.3
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 1.8e-30 137.9 427 33.5
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 2.4e-30 137.5 401 31.7
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 7.0e-30 136.0 151 53.6
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 4.5e-29 133.3 385 33.5
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 1.7e-28 131.3 449 33.6
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 6.5e-28 129.4 418 33.7
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 6.5e-28 129.4 418 33.7
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 6.5e-28 129.4 418 33.7
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 4.2e-27 126.7 418 35.2
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 3.6e-26 123.6 421 34.0
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 3.6e-26 123.6 180 48.3
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 1.4e-25 121.7 85 67.1
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.1e-24 118.6 213 41.8
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.1e-24 118.6 213 41.8
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 2.6e-24 117.5 102 63.7
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 7.4e-24 115.9 201 42.8
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 1.7e-23 114.8 368 33.2
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 4.8e-23 113.2 249 37.3
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 4.8e-23 113.2 132 49.2
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.1e-22 112.1 352 31.2
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 1.8e-22 111.3 102 63.7
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 2.4e-22 110.9 93 65.6
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-22 110.2 86 65.1
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 5.3e-22 109.8 214 38.3
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.3e-20 105.1 62 80.6
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 1.6e-18 98.2 189 38.1
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 8.3e-15 85.9 441 29.3
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 2.4e-14 84.3 382 31.9
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 3.1e-14 84.0 359 27.9
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 7.2e-11 72.8 81 55.6
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 2.1e-10 71.2 52 63.5
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 4.7e-10 70.1 95 51.6
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 4.7e-10 70.1 205 32.2
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 1.2e-08 65.5 35 85.7
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 1.2e-08 65.5 35 85.7
CSS0038668 Camellia sinensis var. sinensis HOM05D014000 ORTHO05D006717 4.9e-07 60.1 70 48.6
Cpa.g.c33129.1 Carica papaya HOM05D005890 ORTHO05D006717 7.0e-06 56.2 123 38.2


User provided reference genes

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