Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 4.5e-104 381.3 203 100.0
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 6.6e-95 350.9 204 93.1
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 6.0e-56 221.5 202 68.3
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 4.6e-32 142.1 206 48.5
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 1.8e-31 140.2 206 48.1
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 8.7e-31 137.9 220 45.5
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 8.7e-31 137.9 224 44.6
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 8.2e-29 131.3 198 47.0
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 1.8e-28 130.2 217 43.3
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 1.5e-27 127.1 203 44.8
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 4.5e-27 125.6 203 44.3
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 5.9e-27 125.2 203 44.3
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 7.6e-27 124.8 210 43.3
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 3.8e-26 122.5 203 46.8
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 6.5e-26 121.7 199 40.7
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 6.5e-26 121.7 201 43.3
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 1.4e-25 120.6 204 41.2
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 4.2e-25 119.0 203 42.9
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 5.5e-25 118.6 212 42.5
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 9.3e-25 117.9 201 44.8
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 9.3e-25 117.9 210 41.9
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 2.1e-24 116.7 208 42.3
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 4.6e-24 115.5 203 42.4
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 7.9e-24 114.8 208 44.2
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 1.8e-23 113.6 208 43.3
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 1.8e-23 113.6 225 40.4
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 1.8e-23 113.6 202 43.1
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 1.8e-23 113.6 213 40.8
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 3.0e-23 112.8 209 41.1
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 3.0e-23 112.8 208 43.3
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 3.9e-23 112.5 218 45.0
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 8.7e-23 111.3 252 37.7
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 3.3e-22 109.4 205 39.5
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 5.7e-22 108.6 198 43.4
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 9.7e-22 107.8 205 41.5
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 1.3e-21 107.5 200 42.5
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 6.3e-21 105.1 204 40.2
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 2.4e-20 103.2 214 37.4
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 3.1e-20 102.8 214 37.4
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 4.1e-20 102.4 195 43.6
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 2.0e-19 100.1 225 38.7
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 1.3e-18 97.4 119 53.8
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 3.8e-18 95.9 204 36.8
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 6.5e-18 95.1 239 36.4
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 8.5e-18 94.7 252 34.5
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 3.2e-17 92.8 202 36.6
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 4.2e-17 92.4 216 36.1
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 5.5e-17 92.0 200 37.5
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 5.5e-17 92.0 204 35.8
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 2.7e-16 89.7 206 38.3
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 4.6e-16 89.0 205 36.1
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 6.1e-16 88.6 200 37.0
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 7.9e-16 88.2 202 36.6
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 1.4e-15 87.4 206 36.4
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 3.0e-15 86.3 171 38.6
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 3.9e-15 85.9 97 54.6
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 6.7e-15 85.1 222 34.7
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 1.1e-14 84.3 213 34.7
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 2.0e-14 83.6 208 36.1
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 3.3e-14 82.8 226 34.1
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 3.3e-14 82.8 207 36.7
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 4.3e-14 82.4 217 35.9
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 7.4e-14 81.6 204 34.3
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 9.7e-14 81.3 213 34.3
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 9.7e-14 81.3 209 37.8
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 1.3e-13 80.9 207 33.8
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 2.2e-13 80.1 213 33.8
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 2.2e-13 80.1 213 33.8
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 4.8e-13 79.0 240 32.5
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 8.2e-13 78.2 225 33.3
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 8.2e-13 78.2 196 34.2
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 1.8e-12 77.0 201 31.8
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 2.4e-12 76.6 200 33.5
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 3.1e-12 76.3 197 34.0
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 5.3e-12 75.5 240 30.8
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 6.9e-12 75.1 208 33.7
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 9.1e-12 74.7 208 34.6
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 2.0e-11 73.6 205 32.7
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 3.4e-11 72.8 207 35.7
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 4.5e-11 72.4 190 35.3
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 5.9e-11 72.0 220 33.6
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 1.3e-10 70.9 221 32.1
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 2.9e-10 69.7 219 29.7
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 2.9e-10 69.7 187 31.0
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 2.5e-09 66.6 199 30.2
Ah.04g155760 Amaranthus hybridus HOM05D007526 ORTHO05D009350 7.2e-09 65.1 212 30.7
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 9.4e-09 64.7 74 50.0
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 1.2e-08 64.3 207 33.8
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 7.9e-08 61.6 90 43.3
Lalb_Chr10g0098881 Lupinus albus HOM05D007526 ORTHO05D009350 1.0e-07 61.2 204 35.3
AUR62015571 Chenopodium quinoa HOM05D007526 ORTHO05D009350 2.3e-07 60.1 213 30.0
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 5.1e-07 58.9 60 53.3
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 1.1e-06 57.8 187 28.9
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 2.6e-06 56.6 207 30.9
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 2.6e-06 56.6 238 29.4
RcHm_v2.0_Chr6g0288121 Rosa chinensis HOM05D008367 ORTHO05D010529 2.6e-06 56.6 189 30.2
Duzib138G1787 Durio zibethinus HOM05D008367 ORTHO05D010529 9.7e-06 54.7 188 32.4


User provided reference genes

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