Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 0.0e+00 1863.2 968 100.0
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 0.0e+00 1775.0 969 95.8
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 0.0e+00 1692.6 968 91.3
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 0.0e+00 1353.2 970 76.6
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 1.6e-284 983.0 1005 56.8
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 5.2e-283 978.0 989 56.0
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 1.3e-281 973.4 987 55.8
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 4.0e-275 951.8 999 54.5
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 6.8e-275 951.0 995 56.3
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 7.8e-271 937.6 977 55.7
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 3.9e-270 935.3 997 55.6
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 4.4e-266 921.8 979 55.1
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 1.3e-265 920.2 978 53.9
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 8.4e-265 917.5 952 54.8
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 3.2e-264 915.6 983 54.1
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 6.0e-263 911.4 984 54.0
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 3.0e-262 909.1 984 54.7
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 3.3e-261 905.6 978 54.8
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 4.3e-261 905.2 989 53.2
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 5.6e-261 904.8 1008 52.7
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.6e-260 902.1 988 53.5
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 9.0e-259 897.5 978 53.9
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 2.6e-258 896.0 985 53.3
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 3.4e-258 895.6 985 53.8
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.7e-257 893.3 976 54.4
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.9e-257 892.5 987 53.4
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 6.4e-257 891.3 980 53.1
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 6.4e-257 891.3 991 52.6
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 1.1e-256 890.6 983 54.4
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 1.6e-255 886.7 978 53.6
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 2.1e-255 886.3 979 53.0
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 6.0e-255 884.8 1016 51.6
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 7.9e-255 884.4 987 52.7
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 2.3e-254 882.9 1004 51.1
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.5e-253 879.4 1004 51.6
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 5.6e-253 878.2 995 53.8
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 7.4e-253 877.9 991 52.6
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 9.6e-253 877.5 984 53.0
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 2.0e-250 869.8 992 52.1
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 6.4e-249 864.8 984 53.2
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 3.0e-246 855.9 981 50.9
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 1.1e-245 854.0 991 51.3
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 2.5e-245 852.8 1025 49.3
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 5.6e-245 851.7 1033 49.3
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 2.8e-244 849.4 1029 49.0
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 4.0e-243 845.5 981 52.6
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 1.2e-242 844.0 986 51.2
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.5e-242 843.6 1033 49.9
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 2.0e-242 843.2 1044 49.1
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.3e-241 840.5 988 52.1
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.4e-240 837.0 1015 48.6
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 5.5e-240 835.1 1121 48.3
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 1.0e-238 830.9 1016 49.4
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 3.0e-238 829.3 1157 47.0
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 1.6e-236 823.5 1023 50.6
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 6.3e-236 821.6 1023 50.3
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.8e-235 820.1 975 50.4
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 4.5e-234 815.5 973 49.4
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 5.0e-233 812.0 996 49.8
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 2.5e-232 809.7 927 52.6
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.2e-231 807.4 1088 46.1
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 2.7e-231 806.2 991 48.8
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 7.9e-231 804.7 990 48.9
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 1.0e-230 804.3 975 48.9
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 1.0e-230 804.3 681 61.1
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.0e-230 804.3 996 48.0
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 3.0e-230 802.7 991 48.3
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 4.3e-229 798.9 1037 47.3
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.2e-228 796.6 995 48.1
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 3.1e-227 792.7 1029 47.7
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.2e-226 790.8 987 48.5
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 5.9e-226 788.5 984 48.5
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 5.0e-225 785.4 985 48.7
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.1e-224 784.3 976 49.8
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 7.2e-224 781.6 1035 47.1
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 1.2e-223 780.8 994 47.5
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 1.6e-223 780.4 976 48.8
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 2.7e-223 779.6 958 48.4
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 3.0e-222 776.2 978 47.6
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 5.7e-221 771.9 983 47.6
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 6.3e-220 768.5 912 48.8
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 1.4e-219 767.3 983 47.8
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 2.4e-219 766.5 977 47.5
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 2.0e-218 763.5 976 47.4
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 2.6e-218 763.1 1029 46.6
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 5.9e-218 761.9 978 47.3
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 2.9e-217 759.6 969 47.1
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 3.8e-217 759.2 967 47.1
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 3.8e-217 759.2 681 58.1
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.1e-216 757.7 984 47.1
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 1.9e-216 756.9 667 58.6
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 1.4e-214 750.7 979 48.1
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 1.4e-214 750.7 689 56.9
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 2.0e-213 746.9 663 58.1
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 3.7e-212 742.7 670 57.2
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 8.2e-212 741.5 669 59.2
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 1.4e-211 740.7 719 55.8
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 2.0e-210 736.9 770 51.8
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 1.7e-209 733.8 977 47.2
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 6.5e-209 731.9 961 47.0
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 1.9e-208 730.3 998 46.2
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 3.2e-208 729.6 979 46.7
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 3.6e-207 726.1 979 47.3
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 8.8e-206 721.5 974 46.8
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 6.3e-204 715.3 998 45.6
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 1.8e-203 713.8 1002 45.3
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 3.7e-196 689.5 966 45.3
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.6e-194 684.1 971 44.8
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 7.2e-192 675.2 976 42.5
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.7e-188 664.1 662 53.2
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 4.0e-182 642.9 760 47.6
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 2.2e-180 637.1 1032 40.6
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 5.9e-178 629.0 816 45.1
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.0e-173 614.0 1001 41.6
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.5e-168 597.0 1034 40.1
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 4.1e-155 553.1 725 44.1
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 8.9e-150 535.4 635 46.8
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 3.2e-147 526.9 906 39.6
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 1.4e-139 501.5 735 44.8
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 3.2e-131 473.8 677 42.1
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 6.5e-100 369.8 607 35.6
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.8e-97 361.7 311 57.9
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 3.3e-96 357.5 570 36.8
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 8.2e-95 352.8 769 32.4
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 8.0e-90 336.3 459 40.1
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.2e-34 152.9 116 62.9
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 3.1e-33 148.3 116 62.9
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 4.0e-33 147.9 409 27.6
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.0e-24 119.0 349 37.0
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 6.4e-23 114.0 180 41.1
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.1e-22 113.2 166 42.8
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 2.9e-15 88.6 141 41.1
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 3.8e-15 88.2 141 41.1
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 2.3e-12 79.0 81 50.6
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 9.6e-11 73.6 81 49.4
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 3.1e-09 68.6 67 58.2
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 7.6e-08 63.9 80 46.2


User provided reference genes

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