Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G011680 Cucumis sativus L. HOM05D008157 ORTHO05D009575 2.1e-115 419.1 220 100.0
MELO3C006376.2 Cucumis melo HOM05D008157 ORTHO05D009575 7.6e-105 384.0 220 91.4
ClCG05G003990 Citrullus lanatus HOM05D008157 ORTHO05D009575 1.3e-91 340.1 220 83.2
Sed0015987 Sechium edule HOM05D008157 ORTHO05D009575 2.2e-64 249.6 223 68.2
Manes.15G045800 Manihot esculenta HOM05D008157 ORTHO05D009575 2.5e-23 113.2 179 44.7
QL06p021011 Quercus lobata HOM05D008157 ORTHO05D009575 1.4e-21 107.5 193 42.5
Potri.010G065666 Populus trichocarpa HOM05D008157 ORTHO05D009575 2.0e-20 103.6 168 44.0
Potri.008G172000 Populus trichocarpa HOM05D008157 ORTHO05D009575 7.5e-20 101.7 168 42.9
Manes.03G158800 Manihot esculenta HOM05D008157 ORTHO05D009575 3.7e-19 99.4 171 41.5
Haze_11459 Corylus avellana HOM05D008157 ORTHO05D009575 6.4e-19 98.6 200 39.5
Dinv27113 Davidia involucrata HOM05D008157 ORTHO05D009575 8.3e-19 98.2 193 41.5
Atru.chr4.1914 Acer truncatum HOM05D008157 ORTHO05D009575 3.2e-18 96.3 190 39.5
Thecc.04G264100 Theobroma cacao HOM05D008157 ORTHO05D009575 7.0e-18 95.1 176 40.3
TWI09G0993 Tripterygium wilfordii HOM05D008157 ORTHO05D009575 7.0e-18 95.1 177 35.6
TAR365G0204 Trochodendron aralioides HOM05D008157 ORTHO05D009575 1.2e-17 94.4 182 41.2
Sabra10G0041500 Salix brachista HOM05D008157 ORTHO05D009575 4.6e-17 92.4 166 41.6
CiPaw.02G106900 Carya illinoinensis HOM05D008157 ORTHO05D009575 1.3e-16 90.9 185 42.2
Sabra08G0131300 Salix brachista HOM05D008157 ORTHO05D009575 5.0e-16 89.0 177 40.7
PGR004G0105 Punica granatum HOM05D008157 ORTHO05D009575 1.1e-15 87.8 148 42.6
Nn1g02959 Nelumbo nucifera HOM05D008157 ORTHO05D009575 3.3e-15 86.3 202 38.1
Prupe.1G048400 Prunus persica HOM05D008157 ORTHO05D009575 1.2e-14 84.3 194 38.1
Cc09_g08530 Coffea canephora HOM05D008157 ORTHO05D009575 2.1e-14 83.6 168 39.9
Cc03_g06320 Coffea canephora HOM05D008157 ORTHO05D009575 3.6e-14 82.8 192 38.0
Duzib151G0689 Durio zibethinus HOM05D008157 ORTHO05D009575 4.7e-14 82.4 156 39.1
Gohir.D02G048700 Gossypium hirsutum HOM05D008157 ORTHO05D009575 4.7e-14 82.4 180 37.8
CANSAT78G1852 Cannabis sativa HOM05D008157 ORTHO05D009575 6.2e-14 82.0 193 38.9
EL10Ac3g06669 Beta vulgaris HOM05D008157 ORTHO05D009575 2.3e-13 80.1 146 41.8
Gohir.A02G043000 Gossypium hirsutum HOM05D008157 ORTHO05D009575 2.3e-13 80.1 180 37.2
MBI10_g35435_MAGBIO Magnolia biondii HOM05D008157 ORTHO05D009575 2.3e-13 80.1 182 40.1
Peaxi162Scf00153g01844 Petunia axillaris HOM05D008157 ORTHO05D009575 2.0e-12 77.0 169 37.3
Rhsim02G0043800 Rhododendron simsii HOM05D008157 ORTHO05D009575 3.4e-12 76.3 189 34.4
FAN12G3964 Fragaria x ananassa HOM05D008157 ORTHO05D009575 1.7e-11 73.9 170 37.1
RcHm_v2.0_Chr4g0395401 Rosa chinensis HOM05D008157 ORTHO05D009575 2.2e-11 73.6 91 49.5
FvH4_4g04630 Fragaria vesca HOM05D008157 ORTHO05D009575 4.9e-11 72.4 170 37.1
DCAR_030762 Daucus carota HOM05D008157 ORTHO05D009575 6.4e-11 72.0 96 43.8
Lj5g0023776 Lotus japonicus HOM05D012468 ORTHO05D009575 6.4e-11 72.0 180 37.8
CSS0033147 Camellia sinensis var. sinensis HOM05D008157 ORTHO05D009575 2.4e-10 70.1 123 41.5
VMungo1215G2213 Vigna mungo HOM05D012468 ORTHO05D009575 5.4e-10 68.9 190 31.6
Glyma.20G200000 Glycine max HOM05D012468 ORTHO05D009575 1.2e-09 67.8 188 34.6
COL.COLO4_15964 Corchorus olitorius HOM05D008157 ORTHO05D009575 3.5e-09 66.2 133 37.6
Hma1.2p1_0112F.1_g054760 Hydrangea macrophylla HOM05D008157 ORTHO05D009575 3.5e-09 66.2 110 40.0
Phvul.011G133515 Phaseolus vulgaris HOM05D012468 ORTHO05D009575 1.7e-08 63.9 194 33.5
MD16G1226400 Malus domestica HOM05D008157 ORTHO05D009575 2.3e-08 63.5 139 37.4
PSO832G3861 Papaver somniferum HOM05D008157 ORTHO05D009575 2.3e-08 63.5 129 40.3
Hund20495 Selenicereus undatus HOM05D008157 ORTHO05D009575 3.0e-08 63.2 198 31.3
TAR633G2472 Trochodendron aralioides HOM05D008157 ORTHO05D009575 3.0e-08 63.2 100 41.0
PSO764G0012 Papaver somniferum HOM05D008157 ORTHO05D009575 5.0e-08 62.4 140 37.1
Nitab4.5_0007351g0030 Nicotiana tabacum HOM05D008157 ORTHO05D009575 6.6e-08 62.0 118 38.1
VMungo0720G2187 Vigna mungo HOM05D012468 ORTHO05D009575 6.6e-08 62.0 186 30.6
Medtr1g073260 Medicago truncatula HOM05D012468 ORTHO05D009575 1.5e-07 60.8 91 44.0
SGA_v2.0_scaffold67G22685 Striga asiatica HOM05D008157 ORTHO05D009575 1.9e-07 60.5 122 35.2
GSVIVG01027916001 Vitis vinifera HOM05D008157 ORTHO05D009575 1.9e-07 60.5 59 54.2
SalBow2G3016 Salvia bowleyana HOM05D008157 ORTHO05D009575 5.6e-07 58.9 173 30.1
GSVIVG01028417001 Vitis vinifera HOM05D008157 ORTHO05D009575 5.6e-07 58.9 205 31.2
Nitab4.5_0000194g0130 Nicotiana tabacum HOM05D008157 ORTHO05D009575 7.3e-07 58.5 80 46.2
Nitab4.5_0000194g0190 Nicotiana tabacum HOM05D008157 ORTHO05D009575 7.3e-07 58.5 118 37.3
Thecc.01G251000 Theobroma cacao HOM05D014916 ORTHO05D009575 7.3e-07 58.5 166 31.3
Aqoxy5G00149 Aquilegia oxysepala HOM05D000655 ORTHO05D001635 9.5e-07 58.2 120 37.5
MSTRG.4173 Avicennia marina HOM05D008157 ORTHO05D009575 3.6e-06 56.2 142 31.0
arahy.Tifrunner.gnm1.ann1.U79AWX Arachis hypogaea HOM05D012468 ORTHO05D009575 8.1e-06 55.1 76 39.5
Psat6g131320 Pisum sativum HOM05D012468 ORTHO05D009575 8.1e-06 55.1 85 42.4
Potri.014G192701 Populus trichocarpa HOM05D008157 ORTHO05D009575 8.1e-06 55.1 160 27.5


User provided reference genes

Program Settings