Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 1.3e-165 586.6 368 100.0
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 1.2e-139 500.4 396 85.1
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 1.3e-136 490.3 372 87.6
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 2.6e-94 349.7 280 68.9
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.5e-36 157.9 312 38.1
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 9.6e-36 155.2 315 36.2
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 1.2e-35 154.8 325 36.6
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.8e-35 153.7 330 37.3
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 3.1e-34 150.2 315 37.1
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 1.7e-32 144.4 311 37.3
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 2.2e-32 144.1 295 35.9
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 1.6e-30 137.9 312 34.6
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.6e-30 137.9 317 34.4
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 3.5e-30 136.7 337 34.4
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 7.8e-30 135.6 328 34.5
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.3e-29 134.8 311 37.6
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 1.7e-29 134.4 326 34.0
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 3.9e-29 133.3 324 36.1
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 8.7e-29 132.1 195 43.6
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.1e-28 131.7 337 33.8
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 1.9e-28 131.0 306 35.0
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 2.5e-28 130.6 268 35.8
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 3.3e-28 130.2 294 35.0
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 3.3e-28 130.2 310 35.8
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 4.3e-28 129.8 304 34.5
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 5.6e-28 129.4 304 34.2
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 5.6e-28 129.4 311 33.4
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 9.6e-28 128.6 319 34.8
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 9.6e-28 128.6 316 33.2
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 9.6e-28 128.6 316 33.5
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 9.6e-28 128.6 300 33.7
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 3.6e-27 126.7 300 34.7
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.8e-27 126.3 302 35.1
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.1e-26 125.2 306 33.3
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 6.9e-26 122.5 326 33.7
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 9.0e-26 122.1 320 33.1
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 1.5e-25 121.3 304 33.2
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 2.0e-25 120.9 332 33.7
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.6e-25 120.6 301 34.6
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 4.5e-25 119.8 307 35.5
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 5.8e-25 119.4 330 31.5
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 7.6e-25 119.0 331 31.1
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 7.6e-25 119.0 302 33.8
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 1.3e-24 118.2 312 31.4
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 1.3e-24 118.2 309 34.0
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 1.7e-24 117.9 321 32.7
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 1.7e-24 117.9 330 33.3
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 2.2e-24 117.5 319 33.2
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 2.9e-24 117.1 306 32.4
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 3.8e-24 116.7 300 33.3
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 4.9e-24 116.3 321 31.5
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 4.9e-24 116.3 301 35.2
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 8.4e-24 115.5 341 32.8
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 8.4e-24 115.5 319 32.6
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 1.9e-23 114.4 310 32.3
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 2.4e-23 114.0 319 32.3
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 4.2e-23 113.2 337 31.5
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 4.2e-23 113.2 297 32.3
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 4.2e-23 113.2 312 32.1
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 4.2e-23 113.2 259 32.8
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 5.4e-23 112.8 307 31.6
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.2e-22 111.7 323 32.2
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 1.2e-22 111.7 319 31.7
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 2.7e-22 110.5 303 33.0
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 6.0e-22 109.4 332 29.2
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 7.9e-22 109.0 295 33.2
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 1.8e-21 107.8 317 31.5
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.8e-21 107.8 327 31.8
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 3.0e-21 107.1 226 35.8
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 5.1e-21 106.3 329 31.0
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 1.1e-20 105.1 323 29.7
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 1.5e-20 104.8 225 33.3
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 1.9e-20 104.4 329 30.7
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 1.9e-20 104.4 304 31.2
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 3.3e-20 103.6 338 29.0
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 3.3e-20 103.6 318 28.9
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 1.3e-19 101.7 326 30.7
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 2.1e-19 100.9 343 28.6
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 3.7e-19 100.1 224 34.8
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 4.0e-18 96.7 268 31.3
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 6.9e-18 95.9 314 30.3
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 9.0e-18 95.5 295 30.8
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.5e-17 94.7 323 28.2
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 2.0e-17 94.4 329 28.9
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 2.0e-17 94.4 314 30.6
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 4.5e-17 93.2 187 35.3
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 9.9e-17 92.0 177 37.9
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 1.3e-16 91.7 329 28.9
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.7e-16 91.3 149 38.9
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 4.9e-16 89.7 283 30.0
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 6.4e-16 89.4 201 33.8
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 4.2e-15 86.7 317 29.7
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 9.3e-15 85.5 262 31.7
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 1.2e-14 85.1 317 28.7
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 1.3e-13 81.6 313 28.1
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 1.8e-13 81.3 314 28.0
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 6.7e-13 79.3 175 34.9
AT1G80130 Arabidopsis thaliana HOM05D001903 ORTHO05D001847 9.6e-12 75.5 131 33.6
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 9.6e-12 75.5 172 31.4
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 1.3e-11 75.1 167 34.1
BolC1t00658H Brassica oleracea HOM05D001903 ORTHO05D001847 3.7e-11 73.6 118 39.8
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 4.8e-11 73.2 290 28.6
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 6.2e-11 72.8 119 35.3
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 8.2e-11 72.4 127 32.3
A01p06030 Brassica napus HOM05D001903 ORTHO05D001847 8.2e-11 72.4 108 39.8
BraA01t00568Z Brassica rapa HOM05D001903 ORTHO05D001847 8.2e-11 72.4 108 39.8
C01p06630 Brassica napus HOM05D001903 ORTHO05D001847 3.1e-10 70.5 107 40.2
Sp7g30100 Schrenkiella parvula HOM05D001903 ORTHO05D001847 3.1e-10 70.5 106 39.6
BcaC09g52017 Brassica carinata HOM05D001903 ORTHO05D001847 1.2e-09 68.6 106 38.7
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 2.0e-09 67.8 312 26.6
Cpa.g.sc10.261 Carica papaya HOM05D001903 ORTHO05D001847 2.6e-09 67.4 105 35.2
Eucgr.C02775 Eucalyptus grandis HOM05D001903 ORTHO05D001847 4.5e-09 66.6 227 26.4
Thhalv10026052m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 4.5e-09 66.6 105 38.1
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.7e-08 64.7 158 39.2
Potri.006G254300 Populus trichocarpa HOM05D001903 ORTHO05D001847 2.2e-08 64.3 109 32.1
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 3.8e-08 63.5 114 31.6
C02p37590 Brassica napus HOM05D001903 ORTHO05D001847 4.9e-08 63.2 118 32.2
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 8.4e-08 62.4 165 30.9
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 8.4e-08 62.4 114 30.7
Sabra06G0198700 Salix brachista HOM05D001903 ORTHO05D001847 8.4e-08 62.4 126 30.2
BcaC03g16002 Brassica carinata HOM05D001903 ORTHO05D001847 5.5e-07 59.7 118 31.4
BolC2t09769H Brassica oleracea HOM05D001903 ORTHO05D001847 5.5e-07 59.7 118 31.4
CAN.G1503.5 Capsicum annuum HOM05D001903 ORTHO05D001847 1.2e-06 58.5 73 37.0
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 1.2e-06 58.5 85 35.3
Sabra13G0020900 Salix brachista HOM05D000307 ORTHO05D000166 2.1e-06 57.8 57 50.9
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 2.7e-06 57.4 63 47.6
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 3.5e-06 57.0 38 63.2
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 7.9e-06 55.8 36 63.9


User provided reference genes

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