Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 9.5e-158 560.1 270 100.0
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 4.3e-142 508.1 268 93.3
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 1.8e-140 502.7 286 86.4
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 1.7e-111 406.4 277 75.5
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 1.3e-106 390.2 228 81.1
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 1.3e-98 363.6 265 67.9
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 2.9e-98 362.5 265 67.5
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 6.5e-98 361.3 265 67.2
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 7.1e-97 357.8 229 72.1
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 1.3e-95 353.6 249 69.1
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 1.3e-95 353.6 249 67.5
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 3.9e-95 352.1 250 68.8
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 6.7e-95 351.3 223 73.5
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 6.7e-95 351.3 253 67.6
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 8.7e-95 350.9 235 70.6
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 1.1e-94 350.5 241 69.3
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 2.5e-94 349.4 256 67.6
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 2.5e-94 349.4 228 71.5
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 3.3e-94 349.0 228 71.1
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 3.3e-94 349.0 224 74.1
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 4.3e-94 348.6 236 69.5
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 7.4e-94 347.8 236 69.9
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 1.3e-93 347.1 234 68.4
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 2.1e-93 346.3 234 70.1
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 2.1e-93 346.3 241 67.6
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 2.8e-93 345.9 214 72.4
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 3.7e-93 345.5 221 71.9
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 8.2e-93 344.4 234 68.4
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 1.4e-92 343.6 232 68.1
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 1.4e-92 343.6 232 67.2
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 1.8e-92 343.2 214 73.8
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 2.4e-92 342.8 245 66.5
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 2.4e-92 342.8 224 71.0
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 4.1e-92 342.0 218 72.9
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 4.1e-92 342.0 232 68.1
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 4.1e-92 342.0 233 68.7
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 4.1e-92 342.0 232 70.3
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 4.1e-92 342.0 225 71.6
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 5.3e-92 341.7 214 72.9
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 5.3e-92 341.7 233 69.5
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 5.3e-92 341.7 232 69.8
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 5.3e-92 341.7 223 70.4
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 6.9e-92 341.3 214 72.4
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 6.9e-92 341.3 223 70.0
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 6.9e-92 341.3 235 68.1
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 1.2e-91 340.5 228 70.2
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 1.2e-91 340.5 233 68.2
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 2.0e-91 339.7 234 67.9
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 2.6e-91 339.3 223 69.5
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 2.6e-91 339.3 223 70.0
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 2.6e-91 339.3 223 70.0
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 3.4e-91 339.0 242 67.4
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 4.5e-91 338.6 232 66.4
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 4.5e-91 338.6 230 68.7
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 5.8e-91 338.2 243 67.5
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 5.8e-91 338.2 254 65.7
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 5.8e-91 338.2 221 69.2
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 7.6e-91 337.8 243 67.5
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 1.0e-90 337.4 243 65.0
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 1.0e-90 337.4 243 65.0
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 1.3e-90 337.0 214 71.0
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 1.3e-90 337.0 214 70.6
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 1.7e-90 336.7 220 70.9
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 1.7e-90 336.7 220 69.1
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 2.2e-90 336.3 243 67.9
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 2.2e-90 336.3 216 71.3
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 2.2e-90 336.3 234 66.7
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 2.2e-90 336.3 225 69.8
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 2.9e-90 335.9 223 69.5
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 3.8e-90 335.5 214 72.4
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 3.8e-90 335.5 223 70.0
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 6.5e-90 334.7 264 62.9
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 6.5e-90 334.7 214 73.4
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 1.4e-89 333.6 224 68.8
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 1.9e-89 333.2 239 65.7
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 2.5e-89 332.8 214 72.9
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 2.5e-89 332.8 223 67.3
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 2.5e-89 332.8 231 66.7
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 7.1e-89 331.3 222 70.7
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 9.3e-89 330.9 218 71.6
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 1.2e-88 330.5 223 69.1
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 2.7e-88 329.3 236 67.8
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 6.1e-88 328.2 214 70.1
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 1.3e-87 327.0 220 70.0
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 1.3e-87 327.0 224 67.9
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 1.8e-87 326.6 239 65.3
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 1.8e-87 326.6 214 69.2
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 1.8e-87 326.6 225 66.7
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 8.7e-87 324.3 273 60.8
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 4.3e-86 322.0 248 64.5
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 2.8e-85 319.3 223 67.7
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 8.2e-85 317.8 207 70.5
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 2.4e-84 316.2 214 69.2
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 6.9e-84 314.7 221 67.0
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 2.0e-83 313.2 205 69.3
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 7.7e-83 311.2 311 54.0
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 2.9e-82 309.3 329 50.5
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 7.9e-80 301.2 213 67.1
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 3.1e-76 289.3 206 67.5
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 6.5e-74 281.6 180 74.4
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 3.6e-72 275.8 185 71.4
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 1.7e-69 266.9 220 60.0
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 1.7e-69 266.9 164 73.2
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 1.5e-65 253.8 165 70.9
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 1.8e-63 246.9 222 53.6
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 2.0e-59 233.4 214 50.5
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 3.7e-53 212.6 141 71.6
LjContig00022g0011299 Lotus japonicus HOM05D006155 ORTHO05D007529 3.2e-49 199.5 171 59.6
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 4.4e-46 189.1 130 68.5
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 9.8e-46 188.0 219 47.0
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 2.0e-43 180.3 101 79.2
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 3.4e-38 162.9 211 43.1
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 2.0e-35 153.7 96 75.0
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 5.0e-34 149.1 210 40.0
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 6.6e-34 148.7 109 67.0
SGA_v2.0_scaffold31G12610 Striga asiatica HOM05D006155 ORTHO05D007529 1.2e-32 144.4 198 42.4
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 6.8e-31 138.7 80 78.8
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 6.8e-31 138.7 80 78.8
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 1.2e-30 137.9 99 67.7
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 2.6e-30 136.7 89 70.8
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 1.3e-26 124.4 106 57.5
Lj5g0004239 Lotus japonicus HOM05D006155 ORTHO05D007529 1.7e-26 124.0 125 53.6
Lj5g0006737 Lotus japonicus HOM05D006155 ORTHO05D007529 1.7e-26 124.0 125 53.6
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 9.5e-25 118.2 79 69.6
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 4.4e-22 109.4 87 62.1
Rhsim09G0048000 Rhododendron simsii HOM05D000029 ORTHO05D002162 1.0e-18 98.2 88 56.8
Actinidia37388 Actinidia chinensis HOM05D006155 ORTHO05D007529 2.3e-18 97.1 61 73.8
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 7.3e-17 92.0 193 33.7
Cre01.g025100 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 9.5e-17 91.7 207 31.4
SGA_v2.0_scaffold31G12618 Striga asiatica HOM05D006155 ORTHO05D007529 1.2e-14 84.7 196 32.7
SalBow7G2104 Salvia bowleyana HOM05D000708 ORTHO05D001418 2.6e-14 83.6 74 56.8
AUR62035886 Chenopodium quinoa HOM05D006155 ORTHO05D007529 2.4e-12 77.0 55 63.6
C09p23060 Brassica napus HOM05D006155 ORTHO05D007529 1.3e-10 71.2 61 62.3


User provided reference genes

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