Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G011340 Cucumis sativus L. HOM05D005430 ORTHO05D007814 1.3e-114 416.4 200 100.0
MELO3C006342.2 Cucumis melo HOM05D005430 ORTHO05D007814 1.0e-71 273.9 219 65.3
ClCG05G003630 Citrullus lanatus HOM05D005430 ORTHO05D007814 1.5e-62 243.4 141 81.6
Sed0020493 Sechium edule HOM05D005430 ORTHO05D007814 1.5e-62 243.4 119 94.1
Sed0021677 Sechium edule HOM05D005430 ORTHO05D007814 1.6e-61 240.0 119 91.6
QL06p023021 Quercus lobata HOM05D005430 ORTHO05D007814 1.3e-50 203.8 118 76.3
CiPaw.01G204600 Carya illinoinensis HOM05D005430 ORTHO05D007814 3.7e-50 202.2 118 76.3
QL11p023894 Quercus lobata HOM05D005430 ORTHO05D007814 4.8e-50 201.8 118 75.4
Prupe.1G058400 Prunus persica HOM05D005430 ORTHO05D007814 3.1e-49 199.1 119 72.3
RcHm_v2.0_Chr4g0396841 Rosa chinensis HOM05D005430 ORTHO05D007814 1.6e-48 196.8 119 72.3
QL05p063758 Quercus lobata HOM05D005430 ORTHO05D007814 1.7e-47 193.4 114 75.4
Haze_11548 Corylus avellana HOM05D005430 ORTHO05D007814 2.9e-47 192.6 112 75.0
FvH4_4g05670 Fragaria vesca HOM05D005430 ORTHO05D007814 2.9e-47 192.6 119 70.6
QL12p006673 Quercus lobata HOM05D005430 ORTHO05D007814 3.8e-47 192.2 114 74.6
MELO3C023093.2 Cucumis melo HOM05D005430 ORTHO05D007814 5.0e-47 191.8 117 72.6
Potri.003G175200 Populus trichocarpa HOM05D005430 ORTHO05D007814 5.0e-47 191.8 118 72.0
QL05p063717 Quercus lobata HOM05D005430 ORTHO05D007814 5.0e-47 191.8 114 74.6
FAN07G2372 Fragaria x ananassa HOM05D005430 ORTHO05D007814 6.5e-47 191.4 119 70.6
MD13G1228600 Malus domestica HOM05D005430 ORTHO05D007814 8.6e-47 191.0 115 72.2
MD16G1234100 Malus domestica HOM05D005430 ORTHO05D007814 8.6e-47 191.0 118 69.5
Cfa014874 Carpinus fangiana HOM05D005430 ORTHO05D007814 1.1e-46 190.7 112 75.0
FAN17G1087 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.9e-46 189.9 118 69.5
Sed0023963 Sechium edule HOM05D005430 ORTHO05D007814 1.9e-46 189.9 120 70.8
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 4.2e-46 188.7 118 71.2
Thecc.04G212700 Theobroma cacao HOM05D005430 ORTHO05D007814 7.2e-46 188.0 119 72.3
Duzib212G0862 Durio zibethinus HOM05D005430 ORTHO05D007814 9.5e-46 187.6 119 72.3
Sabra03G0128400 Salix brachista HOM05D005430 ORTHO05D007814 9.5e-46 187.6 117 71.8
Cpa.g.sc59.85 Carica papaya HOM05D005430 ORTHO05D007814 1.2e-45 187.2 118 70.3
FAN22G2342 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.2e-45 187.2 119 68.9
CsaV3_2G012000 Cucumis sativus L. HOM05D005430 ORTHO05D007814 1.6e-45 186.8 114 71.9
Manes.03G153100 Manihot esculenta HOM05D005430 ORTHO05D007814 2.8e-45 186.0 114 72.8
Atru.chr4.1803 Acer truncatum HOM05D005430 ORTHO05D007814 3.6e-45 185.7 121 71.1
FAN12G0934 Fragaria x ananassa HOM05D005430 ORTHO05D007814 4.7e-45 185.3 117 69.2
Gohir.A10G120900 Gossypium hirsutum HOM05D005430 ORTHO05D007814 4.7e-45 185.3 117 72.6
Gohir.D10G145400 Gossypium hirsutum HOM05D005430 ORTHO05D007814 4.7e-45 185.3 117 72.6
Gorai.011G162600 Gossypium raimondii HOM05D005430 ORTHO05D007814 4.7e-45 185.3 117 72.6
Potri.001G053100 Populus trichocarpa HOM05D005430 ORTHO05D007814 4.7e-45 185.3 118 69.5
Dinv38286 Davidia involucrata HOM05D005430 ORTHO05D007814 4.0e-44 182.2 114 72.8
Manes.15G049100 Manihot esculenta HOM05D005430 ORTHO05D007814 4.0e-44 182.2 114 71.9
COL.COLO4_34091 Corchorus olitorius HOM05D005430 ORTHO05D007814 5.2e-44 181.8 119 70.6
CANSAT78G1772 Cannabis sativa HOM05D005430 ORTHO05D007814 1.2e-43 180.6 113 69.0
CANSAT78G2053 Cannabis sativa HOM05D005430 ORTHO05D007814 1.2e-43 180.6 113 69.0
Ciclev10006174m.g Citrus clementina HOM05D005430 ORTHO05D007814 1.5e-43 180.3 118 66.1
Eucgr.H00103 Eucalyptus grandis HOM05D005430 ORTHO05D007814 2.0e-43 179.9 142 62.0
Lsat_1_v5_gn_6_62741 Lactuca sativa HOM05D005430 ORTHO05D007814 5.7e-43 178.3 116 68.1
Sed0027066 Sechium edule HOM05D005430 ORTHO05D007814 3.7e-42 175.6 123 64.2
Psat1g167840 Pisum sativum HOM05D005430 ORTHO05D007814 3.1e-41 172.6 113 66.4
TWI73G0050 Tripterygium wilfordii HOM05D005430 ORTHO05D007814 1.2e-40 170.6 120 67.5
Glyma.15G129600 Glycine max HOM05D005430 ORTHO05D007814 1.6e-40 170.2 113 65.5
CSS0041852 Camellia sinensis var. sinensis HOM05D005430 ORTHO05D007814 2.7e-40 169.5 116 68.1
VMungo0540G1768 Vigna mungo HOM05D005430 ORTHO05D007814 2.7e-40 169.5 113 64.6
THA.LOC104821619 Tarenaya hassleriana HOM05D005430 ORTHO05D007814 5.9e-40 168.3 116 63.8
Phvul.006G128700 Phaseolus vulgaris HOM05D005430 ORTHO05D007814 1.0e-39 167.5 125 60.0
CAN.G1745.2 Capsicum annuum HOM05D005430 ORTHO05D007814 1.3e-39 167.2 119 63.0
HanXRQChr07g0185851 Helianthus annuus HOM05D005430 ORTHO05D007814 1.7e-39 166.8 115 66.1
GSVIVG01029041001 Vitis vinifera HOM05D005430 ORTHO05D007814 2.3e-39 166.4 114 64.9
Glyma.09G023500 Glycine max HOM05D005430 ORTHO05D007814 3.8e-39 165.6 113 63.7
TPR.G26323 Trifolium pratense HOM05D005430 ORTHO05D007814 5.0e-39 165.2 126 58.7
Lalb_Chr15g0088741 Lupinus albus HOM05D005430 ORTHO05D007814 6.6e-39 164.9 113 63.7
Medtr2g030100 Medicago truncatula HOM05D005430 ORTHO05D007814 1.1e-38 164.1 113 63.7
TPR.G26356 Trifolium pratense HOM05D005430 ORTHO05D007814 1.1e-38 164.1 115 63.5
Medtr2g030080 Medicago truncatula HOM05D005430 ORTHO05D007814 1.9e-38 163.3 113 62.8
Oeu041168.1 Olea europaea HOM05D005430 ORTHO05D007814 1.9e-38 163.3 126 61.1
AL8G20530 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 3.3e-38 162.5 116 62.1
Oeu033089.1 Olea europaea HOM05D005430 ORTHO05D007814 5.6e-38 161.8 112 64.3
arahy.Tifrunner.gnm1.ann1.D09HZI Arachis hypogaea HOM05D005430 ORTHO05D007814 9.5e-38 161.0 133 54.1
Solyc12g098110.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 2.1e-37 159.8 113 61.1
Sopen12g032930 Solanum pennellii HOM05D005430 ORTHO05D007814 2.1e-37 159.8 113 61.1
AT3G24060 Arabidopsis thaliana HOM05D005430 ORTHO05D007814 3.6e-37 159.1 114 61.4
PGSC0003DMG400016877 Solanum tuberosum HOM05D005430 ORTHO05D007814 3.6e-37 159.1 113 61.1
Hma1.2p1_0903F.1_g235070 Hydrangea macrophylla HOM05D005430 ORTHO05D007814 6.1e-37 158.3 111 60.4
Sp3g21900 Schrenkiella parvula HOM05D005430 ORTHO05D007814 8.0e-37 157.9 114 61.4
CAN.G706.30 Capsicum annuum HOM05D005430 ORTHO05D007814 1.0e-36 157.5 113 61.9
AL3G39310 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 1.8e-36 156.8 114 60.5
Carub.0003s2446 Capsella rubella HOM05D005430 ORTHO05D007814 1.8e-36 156.8 114 60.5
CARHR100160 Cardamine hirsuta HOM05D005430 ORTHO05D007814 1.8e-36 156.8 114 61.4
BcaB04g20397 Brassica carinata HOM05D005430 ORTHO05D007814 2.3e-36 156.4 116 60.3
SGA_v2.0_scaffold2G00855 Striga asiatica HOM05D005430 ORTHO05D007814 2.3e-36 156.4 140 50.7
Rhsim06G0013100 Rhododendron simsii HOM05D005430 ORTHO05D007814 3.0e-36 156.0 111 64.0
Thhalv10003022m.g Eutrema salsugineum HOM05D005430 ORTHO05D007814 4.0e-36 155.6 116 60.3
Solyc09g091360.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 4.0e-36 155.6 112 59.8
HanXRQChr02g0059521 Helianthus annuus HOM05D005430 ORTHO05D007814 1.2e-35 154.1 115 57.4
A01p31010 Brassica napus HOM05D005430 ORTHO05D007814 1.5e-35 153.7 114 58.8
BraA01t03227Z Brassica rapa HOM05D005430 ORTHO05D007814 1.5e-35 153.7 114 58.8
Migut.N00331 Erythranthe guttata HOM05D005430 ORTHO05D007814 2.6e-35 152.9 117 59.0
SalBow3G0850 Salvia bowleyana HOM05D005430 ORTHO05D007814 1.4e-33 147.1 116 58.6
Sc13g0002820 Simmondsia chinensis HOM05D005430 ORTHO05D007814 1.4e-33 147.1 121 53.7
BolC1t03901H Brassica oleracea HOM05D005430 ORTHO05D007814 5.0e-31 138.7 107 57.0
C01p39510 Brassica napus HOM05D005430 ORTHO05D007814 8.6e-31 137.9 107 56.1
Nitab4.5_0008614g0010 Nicotiana tabacum HOM05D005430 ORTHO05D007814 5.6e-30 135.2 99 63.6
SHI00018 Sapria himalayana HOM05D005430 ORTHO05D007814 3.6e-29 132.5 112 55.4
EL10Ac3g06777 Beta vulgaris HOM05D005430 ORTHO05D007814 3.4e-27 125.9 98 58.2
vmacro22822 Vaccinium macrocarpon HOM05D005430 ORTHO05D007814 3.5e-24 115.9 89 61.8
Actinidia25081 Actinidia chinensis HOM05D005430 ORTHO05D007814 1.1e-22 110.9 87 62.1
Migut.G00603 Erythranthe guttata HOM05D005430 ORTHO05D007814 1.5e-19 100.5 120 42.5
COL.COLO4_34097 Corchorus olitorius HOM05D005430 ORTHO05D007814 2.4e-17 93.2 126 38.1
Duzib212G0436 Durio zibethinus HOM05D005430 ORTHO05D007814 2.4e-17 93.2 126 34.9
Cpa.g.sc59.81 Carica papaya HOM05D005430 ORTHO05D000119 5.4e-17 92.0 111 39.6
Nitab4.5_0003185g0070 Nicotiana tabacum HOM05D005430 ORTHO05D007814 5.4e-17 92.0 62 71.0
RcHm_v2.0_Chr4g0396551 Rosa chinensis HOM05D005430 ORTHO05D000119 7.1e-17 91.7 112 38.4
SalBow2G0067 Salvia bowleyana HOM05D005430 ORTHO05D000119 2.1e-16 90.1 120 37.5
Thecc.04G213200 Theobroma cacao HOM05D005430 ORTHO05D007814 3.5e-16 89.4 125 34.4
Gorai.006G055200 Gossypium raimondii HOM05D005430 ORTHO05D007814 1.0e-15 87.8 127 36.2
COL.COLO4_34098 Corchorus olitorius HOM05D000048 ORTHO05D000207 2.3e-15 86.7 125 34.4
Gohir.A09G053500 Gossypium hirsutum HOM05D005430 ORTHO05D000119 2.3e-15 86.7 125 36.8
Gohir.D09G053032 Gossypium hirsutum HOM05D005430 ORTHO05D007814 2.3e-15 86.7 127 36.2
Hma1.2p1_0146F.1_g065570 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 6.6e-15 85.1 117 41.0
Migut.H02432 Erythranthe guttata HOM05D005430 ORTHO05D000119 2.5e-14 83.2 128 35.2
Oeu024845.1 Olea europaea HOM05D005430 ORTHO05D007814 4.3e-14 82.4 118 35.6
Cpa.g.sc12.57 Carica papaya HOM05D005430 ORTHO05D007814 5.6e-14 82.0 120 36.7
Duzib151G1037 Durio zibethinus HOM05D005430 ORTHO05D007814 5.6e-14 82.0 124 31.5
Cpa.g.sc169.24 Carica papaya HOM05D000256 ORTHO05D000119 7.3e-14 81.6 115 34.8
Gohir.A09G053300 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.6e-13 80.5 129 35.7
Gohir.D09G053020 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.6e-13 80.5 129 35.7
Gorai.006G055400 Gossypium raimondii HOM05D005430 ORTHO05D007814 1.6e-13 80.5 129 35.7
COL.COLO4_34096 Corchorus olitorius HOM05D005430 ORTHO05D007814 2.1e-13 80.1 123 32.5
Hma1.2p1_0146F.1_g065590 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.1e-13 80.1 120 38.3
Thecc.04G213100 Theobroma cacao HOM05D005430 ORTHO05D007814 2.1e-13 80.1 125 32.8
Migut.G00604 Erythranthe guttata HOM05D005430 ORTHO05D007814 3.6e-13 79.3 124 34.7
COL.COLO4_05736 Corchorus olitorius HOM05D005430 ORTHO05D007814 6.2e-13 78.6 115 34.8
Hma1.2p1_0170F.1_g075380 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 1.1e-12 77.8 118 36.4
Migut.F01972 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.8e-12 77.0 132 33.3
SGA_v2.0_scaffold57G20177 Striga asiatica HOM05D005430 ORTHO05D000119 1.8e-12 77.0 117 33.3
Thecc.04G215700 Theobroma cacao HOM05D005430 ORTHO05D007814 1.8e-12 77.0 115 33.0
Hma1.2p1_0903F.1_g234940 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.4e-12 76.6 121 37.2
Hma1.2p1_1359F.1_g278080 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.4e-12 76.6 121 37.2
Migut.J01121 Erythranthe guttata HOM05D000256 ORTHO05D000119 4.0e-12 75.9 159 30.8
Hma1.2p1_0453F.1_g156140 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 4.0e-12 75.9 117 36.8
COL.COLO4_05734 Corchorus olitorius HOM05D005430 ORTHO05D007814 5.2e-12 75.5 138 29.0
Hma1.2p1_1359F.1_g278050 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 8.9e-12 74.7 119 36.1
COL.COLO4_05733 Corchorus olitorius HOM05D005430 ORTHO05D007814 5.8e-11 72.0 141 30.5
Gohir.D05G318200 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.7e-10 70.5 124 29.8
Rhsim03G0222400 Rhododendron simsii HOM05D005430 ORTHO05D007814 1.7e-10 70.5 131 31.3
Gorai.009G341000 Gossypium raimondii HOM05D005430 ORTHO05D007814 2.2e-10 70.1 124 29.8
PGR083G1564 Punica granatum HOM05D005430 ORTHO05D007814 2.9e-10 69.7 94 38.3
QL09p044329 Quercus lobata HOM05D000256 ORTHO05D000119 3.8e-10 69.3 102 32.4
PGR044G0746 Punica granatum HOM05D000256 ORTHO05D000119 8.4e-10 68.2 115 36.5
Potri.001G053300 Populus trichocarpa HOM05D005430 ORTHO05D007814 1.1e-09 67.8 119 28.6
Migut.F01754 Erythranthe guttata HOM05D000256 ORTHO05D000119 3.2e-09 66.2 135 32.6
Hma1.2p1_2329F.1_g320010 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 4.1e-09 65.9 112 36.6
PGR044G1572 Punica granatum HOM05D000256 ORTHO05D000119 5.4e-09 65.5 115 33.9
SalBow4G1538 Salvia bowleyana HOM05D000256 ORTHO05D000119 7.1e-09 65.1 111 30.6
SalBow4G3236 Salvia bowleyana HOM05D000256 ORTHO05D000119 7.1e-09 65.1 111 30.6
TAR362G1185 Trochodendron aralioides HOM05D000256 ORTHO05D000119 7.1e-09 65.1 112 30.4
Oeu008822.1 Olea europaea HOM05D000256 ORTHO05D000119 1.2e-08 64.3 122 33.6
SalBow4G0962 Salvia bowleyana HOM05D000256 ORTHO05D000119 1.6e-08 63.9 111 30.6
SalBow7G1990 Salvia bowleyana HOM05D000256 ORTHO05D000119 1.6e-08 63.9 112 35.7
Migut.F01908 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.1e-08 63.5 134 32.1
Potri.003G201300 Populus trichocarpa HOM05D005430 ORTHO05D000119 2.1e-08 63.5 118 28.8
Phvul.011G169288 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 2.7e-08 63.2 79 40.5
SalBow2G2503 Salvia bowleyana HOM05D005430 ORTHO05D000119 2.7e-08 63.2 99 33.3
Migut.F01649 Erythranthe guttata HOM05D000256 ORTHO05D000119 3.5e-08 62.8 131 33.6
Glyma.01G142100 Glycine max HOM05D000256 ORTHO05D000119 3.5e-08 62.8 117 30.8
SalBow7G0504 Salvia bowleyana HOM05D000256 ORTHO05D000119 3.5e-08 62.8 112 34.8
unitig_699.g19174 Utricularia gibba HOM05D000256 ORTHO05D000119 3.5e-08 62.8 86 39.5
COL.COLO4_05731 Corchorus olitorius HOM05D005430 ORTHO05D007814 4.6e-08 62.4 138 26.1
Ciclev10023262m.g Citrus clementina HOM05D005430 ORTHO05D007814 6.0e-08 62.0 88 29.5
Gohir.A05G316800 Gossypium hirsutum HOM05D005430 ORTHO05D007814 6.0e-08 62.0 124 27.4
SGA_v2.0_scaffold1G00733 Striga asiatica HOM05D000256 ORTHO05D000119 6.0e-08 62.0 119 32.8
CAN.G742.38 Capsicum annuum HOM05D000256 ORTHO05D000119 1.0e-07 61.2 103 32.0
Nitab4.5_0004762g0080 Nicotiana tabacum HOM05D000256 ORTHO05D000119 1.0e-07 61.2 110 30.0
COL.COLO4_05730 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.3e-07 60.8 134 26.9
Oeu051793.1 Olea europaea HOM05D000256 ORTHO05D000119 1.3e-07 60.8 113 35.4
Glyma.01G142000 Glycine max HOM05D000256 ORTHO05D000119 2.3e-07 60.1 119 28.6
SGA_v2.0_scaffold2G01339 Striga asiatica HOM05D000256 ORTHO05D000119 3.0e-07 59.7 108 30.6
Migut.F01928 Erythranthe guttata HOM05D000256 ORTHO05D000119 3.9e-07 59.3 114 30.7
Migut.F01653 Erythranthe guttata HOM05D000256 ORTHO05D000119 5.1e-07 58.9 119 34.5
Gohir.A11G198542 Gossypium hirsutum HOM05D000256 ORTHO05D000119 5.1e-07 58.9 114 28.1
Lsat_1_v5_gn_8_12180 Lactuca sativa HOM05D000256 ORTHO05D000119 5.1e-07 58.9 110 32.7
Gorai.007G244400 Gossypium raimondii HOM05D000256 ORTHO05D000119 8.7e-07 58.2 114 28.1
FAN19G2757 Fragaria x ananassa HOM05D000256 ORTHO05D000119 1.1e-06 57.8 113 33.6
GSVIVG01014873001 Vitis vinifera HOM05D000256 ORTHO05D000119 1.1e-06 57.8 111 34.2
SGA_v2.0_scaffold114G31929 Striga asiatica HOM05D000256 ORTHO05D000119 1.9e-06 57.0 100 29.0
Potri.001G053200 Populus trichocarpa HOM05D008849 ORTHO05D010556 2.5e-06 56.6 109 31.2
Prupe.1G062500 Prunus persica HOM05D000256 ORTHO05D000119 2.5e-06 56.6 107 32.7
CAN.G884.1 Capsicum annuum HOM05D000256 ORTHO05D000119 3.3e-06 56.2 99 32.3
SGA_v2.0_scaffold2G01340 Striga asiatica HOM05D000256 ORTHO05D000119 3.3e-06 56.2 93 31.2
Sopen05g031950 Solanum pennellii HOM05D000256 ORTHO05D000119 4.3e-06 55.8 113 31.9
PGSC0003DMG400037803 Solanum tuberosum HOM05D000256 ORTHO05D000119 5.6e-06 55.5 94 34.0
MELO3C024129.2 Cucumis melo HOM05D000256 ORTHO05D000119 7.3e-06 55.1 111 33.3
Phvul.010G083600 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 7.3e-06 55.1 117 29.1
TPR.G5085 Trifolium pratense HOM05D000256 ORTHO05D000119 7.3e-06 55.1 106 32.1
Nitab4.5_0000401g0130 Nicotiana tabacum HOM05D000256 ORTHO05D000119 9.6e-06 54.7 109 32.1


User provided reference genes

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