Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 0.0e+00 1913.7 1025 100.0
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 0.0e+00 1659.8 1031 86.8
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 0.0e+00 1452.6 1025 77.8
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 0.0e+00 1419.1 809 92.5
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 6.3e-279 964.5 1046 51.8
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 2.9e-276 955.7 955 53.5
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 2.9e-276 955.7 1029 51.4
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 1.9e-275 953.0 1055 51.3
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 1.8e-273 946.4 1033 51.2
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 2.6e-272 942.6 1042 51.2
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 3.5e-269 932.2 1040 51.1
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 1.7e-268 929.9 1046 50.3
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 8.6e-268 927.5 1041 50.8
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 3.3e-267 925.6 1045 50.1
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 9.5e-267 924.1 1041 50.0
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 9.5e-267 924.1 1039 49.8
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 7.5e-264 914.4 1040 50.2
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 9.8e-264 914.1 1035 50.0
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 6.4e-263 911.4 1027 49.9
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 1.6e-261 906.7 940 50.7
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 7.3e-259 897.9 1029 48.9
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 2.8e-258 896.0 1029 48.8
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 1.0e-257 894.0 1026 49.3
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 3.1e-257 892.5 1027 48.4
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 4.1e-254 882.1 1036 48.3
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 6.6e-252 874.8 1033 47.4
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 2.5e-251 872.8 1047 48.2
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 7.3e-251 871.3 950 49.6
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 1.2e-250 870.5 946 51.5
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 8.3e-247 857.8 1027 46.5
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 7.1e-246 854.7 1046 48.2
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 9.2e-246 854.4 902 52.8
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 1.6e-245 853.6 1009 46.7
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 3.5e-245 852.4 1061 46.3
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 4.3e-243 845.5 1044 45.9
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 3.6e-242 842.4 1016 47.1
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 3.2e-238 829.3 938 48.3
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 4.6e-237 825.5 1013 46.3
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 3.1e-233 812.8 883 49.5
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 2.6e-232 809.7 1033 44.7
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 1.7e-231 807.0 998 46.0
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 1.7e-228 797.0 893 49.5
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 3.6e-226 789.3 1097 42.7
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 4.8e-226 788.9 1028 44.0
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 8.1e-226 788.1 955 46.1
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 1.8e-225 786.9 988 44.8
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 2.4e-225 786.6 952 45.6
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 3.4e-224 782.7 1030 43.6
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 1.1e-222 777.7 1032 44.5
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 1.3e-218 764.2 888 47.1
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 6.2e-218 761.9 1034 42.4
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 8.1e-218 761.5 889 47.0
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 7.6e-216 755.0 1030 42.0
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 4.9e-215 752.3 1030 42.0
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 8.4e-215 751.5 1049 42.4
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 1.4e-214 750.7 1043 42.1
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 4.6e-213 745.7 1013 42.4
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 2.3e-212 743.4 1047 41.6
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 3.7e-210 736.1 1017 41.5
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 6.2e-210 735.3 1017 43.7
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 1.4e-209 734.2 1038 40.8
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 2.6e-208 729.9 961 43.0
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 1.0e-207 728.0 955 43.8
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 3.8e-207 726.1 1019 42.2
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 8.7e-204 714.9 1020 41.4
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 1.1e-203 714.5 1016 42.3
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 1.9e-203 713.8 1013 41.8
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 3.3e-203 713.0 905 44.0
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 5.7e-203 712.2 1013 40.4
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 3.7e-202 709.5 910 44.6
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 4.8e-202 709.1 1008 40.7
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 6.3e-202 708.8 1013 42.1
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 1.5e-200 704.1 1020 41.9
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 7.6e-200 701.8 1020 41.8
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 5.0e-199 699.1 1021 42.0
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 1.9e-198 697.2 1040 40.9
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 3.0e-196 689.9 1017 41.7
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 3.7e-194 682.9 940 41.8
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 1.4e-193 681.0 926 42.5
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 2.4e-193 680.2 835 45.5
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 2.9e-191 673.3 1021 40.7
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 6.5e-191 672.2 1036 40.0
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 4.2e-190 669.5 768 46.6
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 2.0e-187 660.6 909 42.4
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 1.7e-186 657.5 904 41.7
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 1.4e-185 654.4 1052 38.8
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 2.5e-182 643.7 877 41.0
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 2.7e-181 640.2 732 49.3
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 2.3e-180 637.1 1029 38.3
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 6.7e-180 635.6 1074 39.2
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 5.3e-177 625.9 1064 39.2
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 5.0e-175 619.4 900 41.3
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 2.0e-163 580.9 655 48.5
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 3.6e-157 560.1 1037 34.2
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 4.0e-156 556.6 827 38.9
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 3.2e-145 520.4 706 42.6
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 4.6e-144 516.5 994 35.1
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 1.4e-140 505.0 895 37.5
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 3.4e-139 500.4 862 37.8
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 3.2e-129 467.2 915 33.8
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 1.2e-107 395.6 1026 30.8
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 4.4e-54 217.6 965 24.4
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 7.5e-54 216.9 263 45.6
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 3.1e-52 211.5 641 29.2
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 2.1e-48 198.7 287 40.8
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 1.3e-45 189.5 722 25.9
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 2.9e-42 178.3 216 50.5
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 6.8e-31 140.6 141 59.6
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 2.0e-27 129.0 433 26.3
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 1.0e-18 100.1 446 24.4
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 2.5e-17 95.5 106 48.1
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 8.9e-15 87.0 786 20.9
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 7.3e-09 67.4 124 37.1
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 2.0e-06 59.3 106 33.0


User provided reference genes

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