Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 6.9e-234 813.5 394 100.0
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 3.4e-225 784.6 394 96.7
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 7.5e-212 740.3 394 92.1
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 3.5e-193 678.3 394 83.2
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 6.9e-157 557.8 397 67.5
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 1.9e-154 549.7 398 67.6
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 1.1e-149 533.9 398 66.1
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 3.1e-149 532.3 391 67.8
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 2.2e-147 526.2 395 65.3
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 1.4e-146 523.5 395 64.3
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 9.3e-146 520.8 395 63.8
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 1.2e-145 520.4 398 64.8
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 3.5e-145 518.8 399 64.2
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 7.9e-145 517.7 398 64.1
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 1.3e-144 516.9 394 64.5
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 1.8e-144 516.5 398 64.3
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 2.3e-144 516.2 399 62.7
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 6.7e-144 514.6 388 63.9
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 8.7e-144 514.2 394 65.2
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 1.1e-143 513.8 394 61.7
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 4.3e-143 511.9 388 65.7
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 5.6e-143 511.5 394 61.7
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 5.6e-143 511.5 387 61.8
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 7.4e-143 511.1 387 62.3
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 9.6e-143 510.8 398 62.6
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 1.3e-142 510.4 398 61.3
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 2.8e-142 509.2 398 61.3
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 2.8e-142 509.2 394 64.7
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 4.8e-142 508.4 398 61.3
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 6.2e-142 508.1 400 60.8
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 1.8e-141 506.5 394 64.7
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 1.8e-141 506.5 388 64.7
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 2.4e-141 506.1 397 61.5
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 4.0e-141 505.4 399 61.7
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 9.0e-141 504.2 398 61.6
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.5e-140 503.4 399 61.2
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 1.5e-140 503.4 389 62.5
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 1.5e-140 503.4 392 61.0
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 2.0e-140 503.1 387 62.3
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 2.6e-140 502.7 389 62.0
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 2.6e-140 502.7 386 61.4
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 5.8e-140 501.5 388 62.1
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 9.9e-140 500.7 386 61.7
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 1.3e-139 500.4 390 61.0
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 1.7e-139 500.0 389 61.2
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 2.2e-139 499.6 397 61.2
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 2.9e-139 499.2 393 61.1
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 2.9e-139 499.2 397 61.0
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 8.4e-139 497.7 398 60.6
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 1.4e-138 496.9 387 62.0
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 1.9e-138 496.5 387 61.5
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 3.2e-138 495.7 397 60.7
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 7.1e-138 494.6 386 61.7
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 1.6e-137 493.4 398 59.5
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 1.6e-137 493.4 387 61.2
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 2.7e-137 492.7 387 60.7
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 1.8e-136 490.0 400 61.5
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.8e-134 482.6 398 60.1
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 1.5e-132 476.9 373 60.3
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 1.5e-132 476.9 373 60.3
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 7.6e-132 474.6 388 59.0
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 4.6e-129 465.3 392 57.7
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 6.0e-129 464.9 392 57.7
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 5.1e-128 461.8 388 59.0
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 1.3e-126 457.2 402 56.7
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 8.2e-126 454.5 397 56.7
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 1.4e-125 453.8 387 58.1
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 1.0e-123 447.6 343 63.3
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 2.9e-123 446.0 387 58.1
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 4.2e-122 442.2 374 56.1
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 1.3e-120 437.2 396 54.0
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 1.5e-119 433.7 386 55.2
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 3.3e-119 432.6 399 53.4
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 4.3e-119 432.2 393 53.9
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 5.7e-119 431.8 394 54.1
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 9.7e-119 431.0 390 54.1
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 3.7e-118 429.1 396 54.5
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 4.8e-118 428.7 388 53.9
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 8.2e-118 427.9 390 53.1
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 6.9e-117 424.9 397 53.7
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 6.9e-117 424.9 397 53.7
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 1.2e-116 424.1 398 53.8
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 3.4e-116 422.5 398 53.3
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 4.5e-116 422.2 384 55.2
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 2.1e-113 413.3 390 54.1
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 7.9e-113 411.4 373 58.4
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 6.7e-112 408.3 376 53.5
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 8.8e-112 407.9 388 53.4
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 1.3e-110 404.1 376 52.9
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 4.8e-110 402.1 393 48.9
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 5.9e-108 395.2 349 55.6
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 3.6e-105 386.0 314 61.8
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 1.4e-104 384.0 354 53.7
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 3.5e-100 369.4 276 63.4
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 5.9e-92 342.0 242 66.9
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 1.0e-91 341.3 401 46.1
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 6.5e-91 338.6 389 42.2
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 3.2e-90 336.3 387 47.3
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 8.0e-89 331.6 268 61.6
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 3.5e-84 316.2 251 62.9
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 6.3e-78 295.4 366 42.6
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 4.1e-77 292.7 396 39.1
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 7.0e-77 292.0 192 70.3
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 4.9e-62 242.7 193 59.1
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 3.2e-61 240.0 162 67.9
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.1e-58 231.5 248 48.0
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 4.4e-55 219.5 194 59.8
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 5.8e-55 219.2 199 58.3
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 2.1e-52 210.7 201 54.2
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 3.0e-51 206.8 233 45.5
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.1e-50 204.9 163 61.3
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 3.5e-44 183.3 152 63.2
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 2.5e-42 177.2 426 29.8
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 7.3e-42 175.6 165 56.4
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 6.2e-41 172.6 137 56.2
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 1.1e-40 171.8 110 73.6
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 7.1e-37 159.1 145 55.2
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 9.3e-37 158.7 384 28.9
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 1.2e-36 158.3 169 46.7
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 7.8e-36 155.6 148 56.8
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 6.2e-33 146.0 93 73.1
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 2.6e-31 140.6 380 30.3
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 1.7e-30 137.9 245 35.5
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.4e-29 134.8 95 69.5
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 5.1e-27 126.3 93 68.8
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 1.7e-22 111.3 88 55.7
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 3.8e-22 110.2 226 33.2
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 5.5e-21 106.3 495 24.4
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 1.1e-16 92.0 155 36.8
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 8.7e-11 72.4 54 63.0
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 5.7e-10 69.7 82 45.1
CAN.G195.33 Capsicum annuum HOM05D005798 ORTHO05D007269 3.4e-07 60.5 72 51.4


User provided reference genes

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