Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.9e-178 629.0 315 100.0
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 2.4e-173 612.1 315 97.5
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 1.9e-162 575.9 363 82.9
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 1.8e-160 569.3 315 89.5
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 2.7e-127 459.1 304 73.0
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 6.5e-126 454.5 303 72.6
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 9.4e-125 450.7 302 72.5
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 3.0e-123 445.7 304 71.4
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 3.4e-122 442.2 304 70.7
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 5.7e-122 441.4 305 70.2
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.7e-121 439.9 303 71.3
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 8.3e-121 437.6 305 70.2
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 3.1e-120 435.6 303 71.3
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 4.1e-120 435.3 304 69.4
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 1.2e-119 433.7 305 68.9
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 1.6e-119 433.3 303 70.0
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 3.5e-119 432.2 305 68.9
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 5.9e-119 431.4 303 71.0
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 1.3e-118 430.3 309 68.0
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 2.9e-118 429.1 305 69.8
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 3.8e-118 428.7 307 68.4
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 3.8e-118 428.7 307 68.1
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 5.0e-118 428.3 305 68.5
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 1.5e-117 426.8 305 69.8
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.9e-117 426.4 303 68.3
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.9e-117 426.4 305 70.2
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.2e-117 425.6 303 67.0
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 4.2e-117 425.2 307 67.1
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 5.5e-117 424.9 303 68.3
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 5.5e-117 424.9 303 67.0
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 9.5e-117 424.1 303 69.6
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 2.1e-116 422.9 304 68.1
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 3.6e-116 422.2 306 68.6
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 4.7e-116 421.8 303 67.3
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 8.0e-116 421.0 306 68.3
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 8.0e-116 421.0 306 68.3
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 2.3e-115 419.5 303 68.6
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 4.0e-115 418.7 309 66.0
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 4.0e-115 418.7 304 68.4
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 6.8e-115 417.9 312 65.7
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 8.8e-115 417.5 303 67.3
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 2.6e-114 416.0 309 67.3
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 7.5e-114 414.5 303 66.7
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 9.8e-114 414.1 303 65.0
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.7e-113 413.3 306 66.0
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 6.3e-113 411.4 307 64.8
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.4e-112 410.2 304 65.8
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 2.4e-112 409.5 304 68.1
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 5.4e-112 408.3 305 65.9
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 1.6e-111 406.8 296 67.6
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 7.8e-111 404.4 308 63.3
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 1.0e-110 404.1 303 65.3
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.0e-110 404.1 302 67.2
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 2.9e-110 402.5 301 65.4
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 6.6e-110 401.4 306 63.4
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 9.5e-109 397.5 308 63.3
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 6.1e-108 394.8 304 63.2
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 2.3e-107 392.9 304 62.5
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 8.9e-107 391.0 304 63.5
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 1.5e-106 390.2 304 62.2
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 2.0e-106 389.8 274 70.1
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.6e-106 389.4 304 62.8
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 7.5e-106 387.9 304 62.8
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 7.5e-106 387.9 289 65.7
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 2.9e-105 386.0 303 64.4
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 2.9e-105 386.0 304 61.8
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 3.7e-105 385.6 304 62.5
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 4.9e-105 385.2 272 69.5
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 8.3e-105 384.4 304 60.9
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 1.4e-104 383.6 304 61.5
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 1.8e-104 383.3 303 63.7
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 2.4e-104 382.9 305 61.0
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 3.2e-104 382.5 305 61.6
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 1.0e-102 377.5 305 60.3
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.3e-102 376.3 305 63.9
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.0e-102 375.9 305 63.9
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 3.9e-102 375.6 309 61.5
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.1e-101 374.0 303 59.7
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-101 374.0 305 64.3
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 1.1e-101 374.0 301 61.5
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.9e-101 373.2 305 63.6
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.5e-101 372.9 304 63.8
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.5e-101 372.9 304 63.8
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 3.3e-101 372.5 305 63.9
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.3e-101 372.1 305 63.9
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.5e-101 370.9 305 63.3
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.5e-101 370.9 305 63.3
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 1.2e-100 370.5 303 59.4
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.3e-99 366.3 309 59.5
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.1e-99 365.9 305 61.0
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 6.8e-99 364.8 303 60.4
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 8.9e-99 364.4 307 60.3
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 1.5e-98 363.6 307 59.6
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 3.4e-98 362.5 307 59.6
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.7e-97 360.1 305 60.0
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.9e-97 358.6 304 62.8
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 1.4e-96 357.1 307 55.7
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 2.4e-96 356.3 264 67.4
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.3e-94 350.5 260 63.5
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 3.9e-94 349.0 303 55.8
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 5.6e-93 345.1 311 55.3
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 7.3e-93 344.7 306 56.9
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.1e-91 340.9 306 54.9
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 6.8e-91 338.2 309 59.2
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.9e-89 332.8 238 64.7
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.2e-88 329.3 303 56.8
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 3.5e-87 325.9 303 54.1
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.6e-87 325.5 306 53.3
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 6.0e-87 325.1 306 52.9
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 3.0e-86 322.8 303 52.5
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 8.6e-86 321.2 303 52.8
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 1.2e-84 317.4 304 58.6
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 1.4e-83 313.9 303 51.5
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 1.4e-83 313.9 303 51.5
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 1.8e-83 313.5 306 51.3
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 3.1e-83 312.8 306 52.0
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 3.1e-83 312.8 347 47.6
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.0e-83 312.4 208 74.0
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 3.4e-82 309.3 304 51.3
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 3.4e-82 309.3 304 51.3
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 4.4e-82 308.9 305 51.1
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 1.3e-81 307.4 307 48.5
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 1.7e-81 307.0 303 49.8
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 9.2e-80 301.2 312 49.7
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 2.8e-76 289.7 320 46.2
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 4.7e-76 288.9 301 48.8
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 2.4e-72 276.6 308 49.4
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 3.2e-72 276.2 188 66.5
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 5.6e-69 265.4 196 61.7
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.1e-67 261.2 213 59.2
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 7.1e-64 248.4 254 49.2
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 7.9e-55 218.4 149 63.1
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 3.3e-53 213.0 144 64.6
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 8.2e-52 208.4 170 55.3
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 2.4e-51 206.8 159 71.1
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 1.4e-48 197.6 208 54.3
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.2e-47 194.5 343 36.7
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 3.6e-39 166.4 160 61.2
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 9.7e-37 158.3 224 40.2
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 7.2e-24 115.5 77 61.0
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 1.6e-23 114.4 261 33.3
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 8.8e-22 108.6 139 46.0
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 1.3e-20 104.8 273 30.0
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 2.4e-19 100.5 162 34.0
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 8.5e-17 92.0 92 58.7
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 4.2e-16 89.7 267 27.0
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.2e-15 88.2 72 55.6
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 3.0e-14 83.6 52 69.2
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.2e-13 81.6 51 64.7
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 7.5e-13 79.0 99 51.5
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 9.7e-13 78.6 85 52.9
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 8.2e-12 75.5 289 24.6
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.0e-09 68.6 50 58.0
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 5.0e-09 66.2 259 27.4
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.2e-07 61.6 53 52.8
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 3.0e-06 57.0 213 26.8
Glyma.09G113200 Glycine max HOM05D004773 ORTHO05D005943 4.0e-06 56.6 49 46.9


User provided reference genes

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