Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 2.5e-184 648.7 335 100.0
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 3.6e-183 644.8 335 99.4
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 1.1e-182 643.3 335 99.1
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 7.1e-179 630.6 335 97.0
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 7.8e-170 600.5 328 92.7
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 1.0e-169 600.1 325 93.2
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 2.3e-169 599.0 328 92.1
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 2.3e-169 599.0 335 91.3
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 2.3e-169 599.0 335 91.3
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 5.1e-169 597.8 327 91.7
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 8.7e-169 597.0 328 91.8
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 1.1e-168 596.7 328 91.8
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 1.9e-168 595.9 328 91.8
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 1.9e-168 595.9 328 92.1
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 4.3e-168 594.7 335 90.7
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 7.3e-168 594.0 328 92.1
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 2.1e-167 592.4 326 91.7
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 3.6e-167 591.7 328 91.2
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 8.1e-167 590.5 326 91.7
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 1.8e-166 589.3 327 90.8
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 4.0e-166 588.2 330 91.5
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 4.0e-166 588.2 328 90.9
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.5e-165 586.3 328 90.9
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 5.8e-165 584.3 327 89.9
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 1.7e-164 582.8 328 90.2
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.2e-164 582.4 327 89.3
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.9e-164 582.0 335 89.0
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 4.9e-164 581.3 328 89.9
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 6.4e-164 580.9 335 88.7
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 8.4e-164 580.5 328 90.2
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 8.4e-164 580.5 327 89.3
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.9e-163 579.3 335 88.7
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 1.9e-163 579.3 328 89.3
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 1.9e-163 579.3 328 89.3
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 4.2e-163 578.2 328 89.3
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 4.2e-163 578.2 373 82.0
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 7.1e-163 577.4 325 90.8
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 7.1e-163 577.4 325 90.8
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 9.3e-163 577.0 335 89.3
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 2.1e-162 575.9 329 86.3
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 2.7e-162 575.5 328 89.0
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 3.5e-162 575.1 328 88.4
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 4.6e-162 574.7 327 87.5
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 4.6e-162 574.7 327 87.5
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 6.0e-162 574.3 327 87.2
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.0e-161 573.5 327 87.2
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 3.0e-161 572.0 327 86.2
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 3.0e-161 572.0 332 87.3
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 3.0e-161 572.0 329 86.9
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 3.0e-161 572.0 327 86.5
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 5.1e-161 571.2 328 87.5
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 6.7e-161 570.9 334 87.7
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 6.7e-161 570.9 326 87.1
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 8.7e-161 570.5 326 88.3
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 8.7e-161 570.5 332 85.2
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 1.9e-160 569.3 328 88.4
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 9.6e-160 567.0 328 85.4
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 9.6e-160 567.0 335 85.4
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.3e-159 566.6 389 77.6
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.8e-159 565.5 335 86.0
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 2.8e-159 565.5 335 84.8
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 3.6e-159 565.1 328 86.3
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 3.6e-159 565.1 327 85.3
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 4.8e-159 564.7 328 85.7
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 4.8e-159 564.7 327 85.9
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 6.2e-159 564.3 327 85.0
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 8.1e-159 563.9 335 84.2
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 8.1e-159 563.9 327 89.3
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 1.1e-158 563.5 327 85.3
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 1.8e-158 562.8 328 86.0
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 2.4e-158 562.4 328 85.7
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 5.3e-158 561.2 328 85.4
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 6.9e-158 560.8 328 85.4
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 6.9e-158 560.8 325 85.5
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 9.0e-158 560.5 335 87.2
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 1.2e-157 560.1 329 84.8
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 1.5e-157 559.7 328 85.4
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 1.5e-157 559.7 362 79.8
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 2.0e-157 559.3 328 85.4
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 2.0e-157 559.3 328 85.1
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 2.0e-157 559.3 328 85.1
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 2.0e-157 559.3 328 85.1
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 2.0e-157 559.3 328 85.1
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 7.6e-157 557.4 328 84.8
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 1.3e-156 556.6 328 84.8
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 3.8e-156 555.1 334 84.7
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 8.4e-156 553.9 458 67.5
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 6.0e-154 547.7 330 83.0
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.8e-153 546.2 330 82.7
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.3e-153 545.8 334 83.5
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.9e-153 545.0 334 83.2
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 2.5e-152 542.3 328 82.9
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 4.3e-152 541.6 314 86.0
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.3e-151 540.0 304 89.1
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 2.8e-151 538.9 325 83.1
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 6.5e-148 527.7 329 82.1
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 2.5e-147 525.8 334 82.3
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 2.5e-147 525.8 328 82.3
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 4.2e-147 525.0 328 80.8
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 1.6e-146 523.1 335 83.3
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 6.0e-146 521.2 300 85.7
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 6.3e-143 511.1 332 78.0
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 3.8e-140 501.9 328 81.1
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 4.2e-139 498.4 327 75.8
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 7.9e-138 494.2 296 85.5
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.3e-137 492.7 380 70.8
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 1.9e-136 489.6 336 73.5
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 2.2e-135 486.1 326 74.8
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.4e-134 483.4 326 77.3
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 7.2e-131 471.1 334 74.6
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 1.6e-130 469.9 332 75.3
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 2.1e-130 469.5 279 84.2
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 5.9e-117 424.9 323 69.3
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 5.0e-116 421.8 234 90.2
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 5.7e-112 408.3 324 60.8
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 6.3e-111 404.8 318 63.5
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.7e-108 396.7 233 84.5
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 8.5e-108 394.4 324 63.3
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 1.5e-104 383.6 320 65.0
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 2.6e-104 382.9 273 72.9
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.8e-97 360.1 334 63.8
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 2.2e-95 353.2 197 91.4
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 7.0e-94 348.2 334 60.8
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 1.0e-92 344.4 234 72.6
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 3.3e-91 339.3 224 76.8
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 8.9e-89 331.3 220 80.5
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 4.9e-87 325.5 220 78.6
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 1.6e-82 310.5 220 76.8
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 6.2e-82 308.5 167 90.4
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 3.0e-76 289.7 333 45.3
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 4.7e-74 282.3 161 88.8
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 2.2e-71 273.5 328 52.4
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 2.2e-71 273.5 161 83.2
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 6.2e-66 255.4 267 55.1
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 4.4e-64 249.2 138 91.3
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 2.1e-58 230.3 130 88.5
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 1.4e-46 191.0 161 65.2
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.0e-44 183.3 106 85.8
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 6.7e-44 182.2 150 64.0
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 8.4e-39 165.2 103 81.6
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 4.2e-38 162.9 181 53.6
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 5.5e-38 162.5 95 89.5
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 3.9e-36 156.4 87 86.2
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.6e-32 143.7 77 92.2
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 1.7e-31 141.0 87 86.2
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 1.1e-30 138.3 88 75.0
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 5.5e-30 136.0 69 91.3
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 3.5e-29 133.3 80 78.8
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 1.0e-28 131.7 74 85.1
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 7.4e-27 125.6 72 83.3
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.4e-24 116.7 75 74.7
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 1.7e-23 114.4 70 87.1
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 3.8e-23 113.2 72 79.2
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 3.2e-22 110.2 69 79.7
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 5.1e-20 102.8 62 83.9
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 1.1e-09 68.6 85 48.2
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 7.0e-09 65.9 34 88.2
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 7.7e-08 62.4 48 68.8


User provided reference genes

Program Settings