Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G009540 Cucumis sativus L. HOM05D006822 ORTHO05D008884 0.0e+00 1198.7 677 100.0
MELO3C006175.2 Cucumis melo HOM05D006822 ORTHO05D008884 0.0e+00 1135.6 679 95.4
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 0.0e+00 1077.0 677 88.6
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 9.3e-279 963.4 678 80.7
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 4.1e-202 708.8 668 60.9
Cfa001701 Carpinus fangiana HOM05D006822 ORTHO05D008884 1.6e-193 680.2 663 61.5
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 6.0e-193 678.3 667 61.9
Thecc.01G374100 Theobroma cacao HOM05D006822 ORTHO05D008884 5.2e-189 665.2 700 59.1
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 8.9e-189 664.5 672 57.0
QL08p051944 Quercus lobata HOM05D006822 ORTHO05D008884 4.9e-187 658.7 685 60.1
Ciclev10019178m.g Citrus clementina HOM05D006822 ORTHO05D008884 8.4e-187 657.9 687 59.8
Manes.01G264800 Manihot esculenta HOM05D006822 ORTHO05D008884 2.4e-186 656.4 689 58.5
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 9.2e-186 654.4 671 59.2
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 1.6e-185 653.7 665 60.2
Duzib133G0703 Durio zibethinus HOM05D006822 ORTHO05D008884 3.3e-183 646.0 687 59.8
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 2.1e-182 643.3 695 58.1
MD02G1201200 Malus domestica HOM05D006822 ORTHO05D008884 2.8e-182 642.9 684 58.3
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 3.6e-182 642.5 690 57.5
Hma1.2p1_0053F.1_g030830 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 8.1e-182 641.3 670 56.7
Atru.chr5.328 Acer truncatum HOM05D006822 ORTHO05D008884 1.1e-181 641.0 675 57.5
Potri.002G149800 Populus trichocarpa HOM05D006822 ORTHO05D008884 1.1e-181 641.0 680 58.5
Cpa.g.sc18.138 Carica papaya HOM05D006822 ORTHO05D008884 1.4e-181 640.6 687 56.9
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 1.4e-181 640.6 694 57.3
CANSAT56G1004 Cannabis sativa HOM05D006822 ORTHO05D008884 2.4e-181 639.8 670 60.6
CSS0016394 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 9.0e-181 637.9 666 60.5
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.2e-177 627.5 665 60.2
Glyma.09G267800 Glycine max HOM05D006822 ORTHO05D008884 1.3e-176 624.0 680 54.0
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 1.3e-176 624.0 674 56.1
Lj7A526T89 Lonicera japonica HOM05D006822 ORTHO05D008884 1.7e-176 623.6 674 58.9
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 3.0e-176 622.9 669 57.0
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 8.1e-174 614.8 666 54.7
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 9.9e-172 607.8 674 58.8
Sc23g0003500 Simmondsia chinensis HOM05D006822 ORTHO05D008884 9.9e-172 607.8 721 56.0
VMungo1383G2566 Vigna mungo HOM05D006822 ORTHO05D008884 1.3e-171 607.4 674 54.3
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 1.9e-170 603.6 670 57.9
Glyma.18G222100 Glycine max HOM05D006822 ORTHO05D008884 1.9e-170 603.6 680 53.1
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 2.4e-170 603.2 665 56.8
Oeu003493.1 Olea europaea HOM05D006822 ORTHO05D008884 7.1e-170 601.7 698 55.6
PSO478G2587 Papaver somniferum HOM05D006822 ORTHO05D008884 1.2e-169 600.9 671 53.2
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 2.7e-169 599.7 667 56.2
Lalb_Chr01g0021331 Lupinus albus HOM05D006822 ORTHO05D008884 4.6e-169 599.0 686 50.6
TWI14G1233 Tripterygium wilfordii HOM05D006822 ORTHO05D008884 7.9e-169 598.2 671 56.5
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 6.7e-168 595.1 689 53.6
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 1.1e-167 594.3 671 55.4
Sopen01g037280 Solanum pennellii HOM05D006822 ORTHO05D008884 1.5e-167 594.0 677 57.6
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 1.9e-167 593.6 691 54.7
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 2.5e-167 593.2 716 53.4
PGSC0003DMG401012750 Solanum tuberosum HOM05D006822 ORTHO05D008884 2.5e-167 593.2 676 56.4
HanXRQChr04g0122211 Helianthus annuus HOM05D006822 ORTHO05D008884 7.4e-167 591.7 674 55.8
Solyc01g091510.4 Solanum lycopersicum HOM05D006822 ORTHO05D008884 9.6e-167 591.3 677 57.6
EL10Ac1g00937 Beta vulgaris HOM05D006822 ORTHO05D008884 2.8e-166 589.7 683 57.0
Prupe.2G147600 Prunus persica HOM05D006822 ORTHO05D008884 2.8e-166 589.7 513 63.9
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 2.8e-166 589.7 698 53.6
Eucgr.D02443 Eucalyptus grandis HOM05D006822 ORTHO05D008884 1.4e-165 587.4 678 56.5
Ah.05g175170 Amaranthus hybridus HOM05D006822 ORTHO05D008884 2.4e-165 586.6 688 56.5
Hma1.2p1_0053F.1_g030820 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 9.9e-164 581.3 525 58.9
Lj1g0013249 Lotus japonicus HOM05D006822 ORTHO05D008884 4.9e-163 578.9 677 53.3
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 1.9e-162 577.0 661 55.2
FAN01G0942 Fragaria x ananassa HOM05D006822 ORTHO05D008884 1.3e-160 570.9 661 57.5
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 5.1e-160 568.9 687 52.3
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 5.1e-160 568.9 686 54.4
AUR62004233 Chenopodium quinoa HOM05D006822 ORTHO05D008884 7.4e-159 565.1 676 51.8
TPR.G26925 Trifolium pratense HOM05D006822 ORTHO05D008884 9.6e-159 564.7 675 55.1
arahy.Tifrunner.gnm1.ann1.K16L32 Arachis hypogaea HOM05D006822 ORTHO05D008884 2.1e-158 563.5 697 53.8
Lsat_1_v5_gn_7_7481 Lactuca sativa HOM05D006822 ORTHO05D008884 8.2e-158 561.6 669 56.2
AUR62013615 Chenopodium quinoa HOM05D006822 ORTHO05D008884 1.1e-157 561.2 680 50.3
FvH4_7g12110 Fragaria vesca HOM05D006822 ORTHO05D008884 1.8e-157 560.5 533 60.6
FAN06G2864 Fragaria x ananassa HOM05D006822 ORTHO05D008884 4.0e-157 559.3 541 60.1
RcHm_v2.0_Chr1g0350861 Rosa chinensis HOM05D006822 ORTHO05D008884 4.0e-157 559.3 530 59.6
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 1.5e-156 557.4 664 53.8
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 1.1e-154 551.2 666 53.8
Nn1g01174 Nelumbo nucifera HOM05D006822 ORTHO05D008884 1.6e-153 547.4 577 56.2
THA.LOC104817014 Tarenaya hassleriana HOM05D006822 ORTHO05D008884 1.0e-152 544.7 672 51.8
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 2.2e-150 537.0 656 54.0
HPP92_015074 Vanilla planifolia HOM05D006822 ORTHO05D008884 6.3e-150 535.4 685 48.5
Actinidia31423 Actinidia chinensis HOM05D006822 ORTHO05D008884 1.1e-143 514.6 664 50.3
Os04g0574600 Oryza sativa ssp. japonica HOM05D006822 ORTHO05D008884 1.5e-143 514.2 681 52.4
CDE11G0821 Ceratophyllum demersum HOM05D006822 ORTHO05D008884 2.8e-142 510.0 636 50.2
Aa31LG1G11250 Aethionema arabicum HOM05D006822 ORTHO05D008884 1.1e-141 508.1 711 49.1
MBI04_g46545_MAGBIO Magnolia biondii HOM05D006822 ORTHO05D008884 9.1e-141 505.0 580 57.1
Zm00001eb073430 Zea mays HOM05D006822 ORTHO05D008884 7.7e-140 501.9 687 52.8
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 1.2e-137 494.6 660 49.1
AT1G01930 Arabidopsis thaliana HOM05D006822 ORTHO05D008884 3.3e-135 486.5 535 49.9
Sp1g00370 Schrenkiella parvula HOM05D006822 ORTHO05D008884 2.8e-134 483.4 527 51.0
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 6.5e-131 472.2 512 52.0
Lsat_1_v5_gn_3_133341 Lactuca sativa HOM05D006822 ORTHO05D008884 8.5e-131 471.9 516 49.6
CSS0048598 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 1.1e-130 471.5 576 55.7
AL1G10390 Arabidopsis lyrata HOM05D006822 ORTHO05D008884 2.1e-129 467.2 516 51.4
Thhalv10007219m.g Eutrema salsugineum HOM05D006822 ORTHO05D008884 8.0e-129 465.3 513 51.7
Carub.0001s0031 Capsella rubella HOM05D006822 ORTHO05D008884 1.4e-128 464.5 508 51.0
C08p53940 Brassica napus HOM05D006822 ORTHO05D008884 1.2e-124 451.4 530 51.1
BolC8t52907H Brassica oleracea HOM05D006822 ORTHO05D008884 1.2e-124 451.4 530 51.1
BraA09t42269Z Brassica rapa HOM05D006822 ORTHO05D008884 6.5e-123 445.7 514 50.4
Eucgr.L02337 Eucalyptus grandis HOM05D006822 ORTHO05D008884 4.7e-121 439.5 594 52.2
FAN03G3111 Fragaria x ananassa HOM05D006822 ORTHO05D008884 1.7e-118 431.0 532 50.4
ECA236G3401 Erigeron canadensis HOM05D006822 ORTHO05D008884 2.2e-118 430.6 445 53.0
SEGI_38546 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 3.1e-117 426.8 687 42.5
HanXRQChr13g0425441 Helianthus annuus HOM05D006822 ORTHO05D008884 3.0e-112 410.2 508 47.2
ATR0757G063 Amborella trichopoda HOM05D006822 ORTHO05D008884 8.6e-99 365.5 378 52.1
ECA240G3107 Erigeron canadensis HOM05D006822 ORTHO05D008884 5.2e-96 356.3 432 48.8
Mapoly0008s0196 Marchantia polymorpha HOM05D006822 ORTHO05D008884 2.4e-93 347.4 652 41.9
COL.COLO4_05508 Corchorus olitorius HOM05D006822 ORTHO05D008884 1.6e-92 344.7 368 52.4
Pp3c3_38070 Physcomitrium patens HOM05D006822 ORTHO05D008884 7.3e-90 335.9 526 39.7
AagrBONN_evm.TU.Sc2ySwM_117.565 Anthoceros agrestis HOM05D006822 ORTHO05D008884 2.6e-87 327.4 640 41.9
CARHR000420 Cardamine hirsuta HOM05D006822 ORTHO05D008884 1.2e-71 275.4 297 53.2
FAN10G0810 Fragaria x ananassa HOM05D006822 ORTHO05D008884 1.4e-69 268.5 540 36.9
CARHR000430 Cardamine hirsuta HOM05D006822 ORTHO05D008884 3.6e-57 227.3 225 52.9
Cre07.g325715 Chlamydomonas reinhardtii HOM05D006822 ORTHO05D008884 1.7e-54 218.4 480 31.9
SEGI_35234 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 1.9e-45 188.3 234 46.2
PRCOL_00005597 Prasinoderma coloniale HOM05D006822 ORTHO05D008884 1.4e-37 162.2 361 33.2
CsaV3_4G032230 Cucumis sativus L. HOM05D006822 ORTHO05D008884 1.3e-35 155.6 107 74.8
Cfa022202 Carpinus fangiana HOM05D006822 ORTHO05D004559 2.6e-31 141.4 579 26.4
Medtr7g075430 Medicago truncatula HOM05D006822 ORTHO05D008884 2.0e-23 115.2 167 44.3
ATR0757G024 Amborella trichopoda HOM05D006822 ORTHO05D004559 3.8e-14 84.3 193 53.9
arahy.Tifrunner.gnm1.ann1.EYK22X Arachis hypogaea HOM05D006822 ORTHO05D008884 2.7e-12 78.2 50 74.0
Medtr7g075450 Medicago truncatula HOM05D006822 ORTHO05D008884 1.7e-09 68.9 93 43.0


User provided reference genes

Program Settings