Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 8.0e-157 557.0 268 100.0
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 1.4e-145 519.6 258 96.5
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 1.6e-141 506.1 258 93.8
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 1.2e-139 500.0 268 89.9
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 1.5e-99 366.7 249 69.5
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 1.5e-99 366.7 249 68.7
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 4.4e-99 365.2 265 66.4
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 4.9e-98 361.7 251 67.3
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 3.2e-97 359.0 262 66.8
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 4.2e-97 358.6 259 66.0
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 9.2e-97 357.5 260 65.4
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 1.2e-96 357.1 260 65.4
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 2.1e-96 356.3 260 66.5
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 6.0e-96 354.8 262 67.6
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 7.8e-96 354.4 258 65.5
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 7.8e-96 354.4 262 63.7
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 1.0e-95 354.0 260 64.6
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 3.0e-95 352.4 259 64.1
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 3.9e-95 352.1 263 65.4
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 6.6e-95 351.3 262 66.0
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 6.6e-95 351.3 262 66.0
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 6.6e-95 351.3 264 63.6
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 3.3e-94 349.0 265 63.4
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 4.3e-94 348.6 253 65.2
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 5.6e-94 348.2 250 66.8
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 7.3e-94 347.8 263 63.9
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 7.3e-94 347.8 250 65.2
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 1.2e-93 347.1 254 63.8
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 2.1e-93 346.3 257 63.8
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 3.6e-93 345.5 266 60.9
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 4.7e-93 345.1 267 63.7
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 6.2e-93 344.7 254 63.8
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 6.2e-93 344.7 258 64.3
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 8.1e-93 344.4 260 64.6
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 8.1e-93 344.4 260 66.5
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 1.1e-92 344.0 260 63.8
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 1.4e-92 343.6 254 63.4
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 2.4e-92 342.8 266 60.2
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 2.4e-92 342.8 251 64.5
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 4.0e-92 342.0 251 64.5
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 4.0e-92 342.0 250 63.6
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 4.0e-92 342.0 254 63.4
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 9.0e-92 340.9 261 60.9
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 1.5e-91 340.1 251 64.5
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 2.0e-91 339.7 258 63.2
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 2.6e-91 339.3 250 63.2
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 2.6e-91 339.3 259 61.0
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 3.4e-91 339.0 251 61.8
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 3.4e-91 339.0 257 61.5
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 4.4e-91 338.6 254 62.2
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 5.8e-91 338.2 251 61.4
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 7.6e-91 337.8 261 60.5
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 7.6e-91 337.8 258 61.6
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 7.6e-91 337.8 252 64.3
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 9.9e-91 337.4 260 60.8
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 1.3e-90 337.0 262 61.5
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 1.3e-90 337.0 251 63.3
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.7e-90 336.7 257 61.5
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 2.2e-90 336.3 251 63.7
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 2.9e-90 335.9 262 60.3
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 3.8e-90 335.5 254 60.2
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 4.9e-90 335.1 257 61.1
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 8.4e-90 334.3 256 60.5
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 8.4e-90 334.3 259 61.8
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 8.4e-90 334.3 251 62.9
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 8.4e-90 334.3 249 62.2
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 1.1e-89 334.0 255 61.6
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 1.4e-89 333.6 255 63.5
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 1.9e-89 333.2 254 63.4
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 1.9e-89 333.2 260 65.4
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 3.2e-89 332.4 250 63.6
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 3.2e-89 332.4 251 62.9
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 4.2e-89 332.0 257 61.9
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 4.2e-89 332.0 250 63.6
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 4.2e-89 332.0 250 63.2
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 5.4e-89 331.6 254 61.0
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 9.3e-89 330.9 254 60.6
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 2.7e-88 329.3 256 60.9
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 6.6e-87 324.7 280 56.8
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 8.7e-87 324.3 250 62.4
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 8.7e-87 324.3 250 61.2
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 4.3e-86 322.0 250 60.8
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 7.3e-86 321.2 260 60.4
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 7.3e-86 321.2 250 61.6
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 2.1e-85 319.7 296 53.7
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 3.6e-85 318.9 253 59.7
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 8.1e-85 317.8 252 59.5
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 1.1e-84 317.4 253 59.7
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 3.1e-84 315.8 256 59.8
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 6.9e-84 314.7 254 61.8
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 9.0e-84 314.3 254 56.7
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 9.3e-81 304.3 291 55.0
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 5.1e-79 298.5 251 60.2
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 8.7e-79 297.7 305 50.8
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 5.6e-78 295.0 242 59.5
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 2.8e-77 292.7 248 54.4
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 3.7e-77 292.4 260 54.6
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 6.2e-77 291.6 269 52.8
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 9.0e-76 287.7 252 57.5
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 3.4e-75 285.8 254 56.3
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 2.5e-73 279.6 240 58.3
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 3.2e-73 279.3 252 51.2
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 5.5e-73 278.5 252 52.4
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 1.6e-72 276.9 254 55.5
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 3.5e-72 275.8 252 52.0
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 5.1e-71 271.9 255 53.7
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 1.6e-69 266.9 254 52.0
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 4.8e-69 265.4 243 53.5
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 9.0e-68 261.2 205 62.9
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 4.1e-60 235.7 179 61.5
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 3.7e-53 212.6 202 55.4
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 5.3e-52 208.8 251 41.0
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 5.9e-51 205.3 263 39.9
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 1.9e-49 200.3 186 56.5
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 4.7e-48 195.7 146 60.3
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 6.1e-48 195.3 261 39.8
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 1.5e-46 190.7 167 60.5
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 5.7e-46 188.7 250 38.8
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 5.3e-44 182.2 177 55.4
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 9.4e-41 171.4 218 45.0
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 1.1e-36 157.9 99 67.7
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 1.1e-36 157.9 99 67.7
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 1.7e-26 124.0 81 66.7
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 8.6e-18 95.1 60 70.0
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 8.6e-18 95.1 60 70.0
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 8.6e-18 95.1 60 70.0
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 7.2e-17 92.0 60 68.3
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.0e-15 88.2 167 37.1
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 3.4e-14 83.2 91 50.5
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 5.7e-14 82.4 126 42.9
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.8e-13 80.1 53 66.0
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.8e-13 80.1 53 66.0
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 1.1e-12 78.2 91 50.5
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 1.5e-09 67.8 97 39.2
FAN22G2156 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.5e-09 67.0 69 47.8
FAN09G2057 Fragaria x ananassa HOM05D000005 ORTHO05D000294 7.3e-09 65.5 59 54.2
FAN19G1473 Fragaria x ananassa HOM05D000005 ORTHO05D000294 2.0e-06 57.4 43 60.5
FAN04G0473 Fragaria x ananassa HOM05D015355 ORTHO05D007549 7.5e-06 55.5 61 44.3


User provided reference genes

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