Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G008450 Cucumis sativus L. HOM05D007340 ORTHO05D008979 1.6e-152 543.9 268 100.0
MELO3C006065.2 Cucumis melo HOM05D007340 ORTHO05D008979 3.9e-143 512.7 268 94.4
ClCG05G001120 Citrullus lanatus HOM05D007340 ORTHO05D008979 4.5e-131 472.6 268 86.6
Sed0013632 Sechium edule HOM05D007340 ORTHO05D008979 1.8e-108 397.5 263 73.0
Haze_00999 Corylus avellana HOM05D007340 ORTHO05D008979 2.0e-75 287.7 265 55.5
Cfa015550 Carpinus fangiana HOM05D007340 ORTHO05D008979 3.0e-71 273.9 264 53.8
QL06p005970 Quercus lobata HOM05D007340 ORTHO05D008979 3.0e-71 273.9 265 55.5
CiPaw.01G157600 Carya illinoinensis HOM05D007340 ORTHO05D008979 8.3e-69 265.8 262 53.8
CSS0042730 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.4e-68 265.0 265 52.1
Prupe.3G113000 Prunus persica HOM05D007340 ORTHO05D008979 5.4e-68 263.1 264 51.5
Duzib151G0496 Durio zibethinus HOM05D007340 ORTHO05D008979 9.2e-68 262.3 262 50.4
Thecc.04G270900 Theobroma cacao HOM05D007340 ORTHO05D008979 9.2e-68 262.3 272 51.8
Cpa.g.sc16.57 Carica papaya HOM05D007340 ORTHO05D008979 1.2e-67 261.9 271 52.4
Gorai.006G074200 Gossypium raimondii HOM05D001150 ORTHO05D008979 2.5e-65 254.2 273 48.4
Gohir.D09G059500 Gossypium hirsutum HOM05D001150 ORTHO05D008979 5.6e-65 253.1 273 48.0
Atru.chr4.2678 Acer truncatum HOM05D007340 ORTHO05D008979 1.2e-64 251.9 256 48.0
Atru.chr4.2685 Acer truncatum HOM05D007340 ORTHO05D008979 1.2e-64 251.9 256 48.0
Dinv44465 Davidia involucrata HOM05D007340 ORTHO05D008979 2.1e-64 251.1 245 53.1
Ciclev10007051m.g Citrus clementina HOM05D007340 ORTHO05D008979 4.7e-64 250.0 201 59.7
Hma1.2p1_0511F.1_g169170 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 1.0e-63 248.8 253 49.4
Hma1.2p1_2025F.1_g311460 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 1.8e-63 248.1 256 48.8
Gohir.A09G060400 Gossypium hirsutum HOM05D001150 ORTHO05D008979 2.3e-63 247.7 273 47.3
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 3.1e-63 247.3 270 47.8
MD02G1277500 Malus domestica HOM05D007340 ORTHO05D008979 5.2e-63 246.5 263 51.7
COL.COLO4_13983 Corchorus olitorius HOM05D007340 ORTHO05D008979 9.8e-62 242.3 254 50.0
TWI73G0639 Tripterygium wilfordii HOM05D007340 ORTHO05D008979 2.9e-61 240.7 266 48.5
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 2.3e-58 231.1 245 49.0
arahy.Tifrunner.gnm1.ann1.PE1C4R Arachis hypogaea HOM05D007340 ORTHO05D008979 4.3e-57 226.9 263 45.6
PGSC0003DMG400004352 Solanum tuberosum HOM05D007340 ORTHO05D008979 5.6e-57 226.5 254 46.5
Lalb_Chr15g0087231 Lupinus albus HOM05D007340 ORTHO05D008979 9.5e-57 225.7 206 52.9
Sopen01g032100 Solanum pennellii HOM05D007340 ORTHO05D008979 1.6e-56 224.9 254 46.5
CANSAT78G0497 Cannabis sativa HOM05D007340 ORTHO05D008979 2.8e-56 224.2 244 49.2
Phvul.003G036500 Phaseolus vulgaris HOM05D007340 ORTHO05D008979 3.6e-56 223.8 243 51.0
Cc03_g02890 Coffea canephora HOM05D007340 ORTHO05D008979 6.2e-56 223.0 273 44.3
Rhsim04G0212000 Rhododendron simsii HOM05D001150 ORTHO05D000998 6.2e-56 223.0 246 51.2
CAN.G522.11 Capsicum annuum HOM05D007340 ORTHO05D008979 1.1e-55 222.2 254 45.7
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 1.4e-55 221.9 254 45.7
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 2.3e-55 221.1 248 46.8
Oeu021055.1 Olea europaea HOM05D007340 ORTHO05D008979 3.1e-55 220.7 250 48.8
vmacro17996 Vaccinium macrocarpon HOM05D007340 ORTHO05D008979 4.0e-55 220.3 244 49.2
Nitab4.5_0003070g0020 Nicotiana tabacum HOM05D007340 ORTHO05D008979 8.9e-55 219.2 248 46.4
EL10Ac8g18451 Beta vulgaris HOM05D007340 ORTHO05D008979 1.2e-54 218.8 213 50.7
Lj4P768T34 Lonicera japonica HOM05D007340 ORTHO05D008979 1.5e-54 218.4 208 51.0
Migut.G00250 Erythranthe guttata HOM05D007340 ORTHO05D008979 2.0e-54 218.0 279 45.2
Medtr5g094770 Medicago truncatula HOM05D007340 ORTHO05D008979 2.6e-54 217.6 245 47.8
Solyc01g080310.4 Solanum lycopersicum HOM05D007340 ORTHO05D008979 4.4e-54 216.9 254 45.3
TAR633G1855 Trochodendron aralioides HOM05D007340 ORTHO05D008979 5.8e-54 216.5 211 51.7
FAN12G4271 Fragaria x ananassa HOM05D007340 ORTHO05D008979 2.2e-53 214.5 239 46.4
THA.LOC104827130 Tarenaya hassleriana HOM05D007340 ORTHO05D008979 2.9e-53 214.2 249 45.4
Eucgr.C03952 Eucalyptus grandis HOM05D007340 ORTHO05D008979 6.4e-53 213.0 268 45.9
RcHm_v2.0_Chr4g0419121 Rosa chinensis HOM05D007340 ORTHO05D008979 6.4e-53 213.0 243 46.9
FvH4_4g14110 Fragaria vesca HOM05D007340 ORTHO05D008979 1.1e-52 212.2 239 46.0
Lj5g0026289 Lotus japonicus HOM05D007340 ORTHO05D008979 1.1e-52 212.2 213 52.6
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 3.2e-52 210.7 246 45.5
Eucgr.C04132 Eucalyptus grandis HOM05D007340 ORTHO05D008979 4.1e-52 210.3 268 45.5
Manes.03G186900 Manihot esculenta HOM05D007340 ORTHO05D008979 9.2e-52 209.1 241 47.3
PGR065G0011 Punica granatum HOM05D007340 ORTHO05D008979 3.5e-51 207.2 218 47.2
Carub.0006s1725 Capsella rubella HOM05D007340 ORTHO05D008979 8.6e-50 202.6 263 42.6
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 3.3e-49 200.7 246 43.5
Sc19g0004680 Simmondsia chinensis HOM05D007340 ORTHO05D008979 5.6e-49 199.9 241 47.7
CSS0023925 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 9.5e-49 199.1 266 45.5
BolC9t58627H Brassica oleracea HOM05D007340 ORTHO05D008979 4.7e-48 196.8 267 43.4
AUR62010965 Chenopodium quinoa HOM05D007340 ORTHO05D008979 8.1e-48 196.1 199 49.7
AL6G30300 Arabidopsis lyrata HOM05D007340 ORTHO05D008979 1.4e-47 195.3 263 41.4
SalBow2G1987 Salvia bowleyana HOM05D007340 ORTHO05D008979 3.1e-47 194.1 213 46.5
Sp6g25440 Schrenkiella parvula HOM05D007340 ORTHO05D008979 3.1e-47 194.1 264 40.2
C09p57580 Brassica napus HOM05D007340 ORTHO05D008979 4.0e-47 193.7 267 43.1
BraA10t44135Z Brassica rapa HOM05D007340 ORTHO05D008979 6.8e-47 193.0 266 40.2
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 6.8e-47 193.0 211 46.0
AT5G18950 Arabidopsis thaliana HOM05D007340 ORTHO05D008979 1.5e-46 191.8 263 41.8
BcaC04g18636 Brassica carinata HOM05D007340 ORTHO05D008979 4.4e-46 190.3 267 40.8
A10p20720 Brassica napus HOM05D007340 ORTHO05D008979 4.4e-46 190.3 269 40.1
AUR62021475 Chenopodium quinoa HOM05D007340 ORTHO05D008979 9.9e-46 189.1 203 47.3
CARHR194060 Cardamine hirsuta HOM05D007340 ORTHO05D008979 3.7e-45 187.2 264 40.9
Glyma.07G161500 Glycine max HOM05D007340 ORTHO05D008979 6.4e-45 186.4 252 44.0
BcaB08g36633 Brassica carinata HOM05D007340 ORTHO05D008979 8.4e-45 186.0 244 43.4
GSVIVG01017865001 Vitis vinifera HOM05D007340 ORTHO05D008979 9.6e-41 172.6 189 48.7
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 5.8e-38 163.3 213 41.8
FAN17G2541 Fragaria x ananassa HOM05D007340 ORTHO05D008979 7.6e-38 162.9 214 41.1
TPR.G28181 Trifolium pratense HOM05D007340 ORTHO05D008979 1.3e-37 162.2 196 44.9
VMungo1215G3235 Vigna mungo HOM05D007340 ORTHO05D008979 7.1e-36 156.4 243 40.3
Lsat_1_v5_gn_5_93381 Lactuca sativa HOM05D007340 ORTHO05D008979 9.3e-36 156.0 202 41.1
TPR.G14140 Trifolium pratense HOM05D007340 ORTHO05D008979 1.5e-33 148.7 207 41.5
CSS0014652 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.6e-32 145.2 150 52.0
HanXRQChr17g0539051 Helianthus annuus HOM05D007340 ORTHO05D008979 2.8e-32 144.4 201 36.3
CSS0037889 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 8.1e-32 142.9 141 51.1
CSS0002707 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.1e-28 132.5 136 52.2
Gohir.D08G046350 Gossypium hirsutum HOM05D007340 ORTHO05D008979 1.4e-28 132.1 114 50.9
Gorai.004G045600 Gossypium raimondii HOM05D007340 ORTHO05D008979 1.4e-28 132.1 114 50.9
HanXRQChr10g0314401 Helianthus annuus HOM05D007340 ORTHO05D008979 3.5e-27 127.5 154 38.3
TPR.G15743 Trifolium pratense HOM05D007340 ORTHO05D008979 7.9e-27 126.3 135 50.4
Aqoxy1G00377 Aquilegia oxysepala HOM05D007340 ORTHO05D008979 1.0e-26 125.9 193 34.7
DCAR_030586 Daucus carota HOM05D007340 ORTHO05D008979 1.5e-25 122.1 140 44.3
CDE04G1227 Ceratophyllum demersum HOM05D007340 ORTHO05D008979 2.2e-21 108.2 240 30.8
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 2.2e-21 108.2 164 36.0
Lsat_1_v5_gn_8_10680 Lactuca sativa HOM05D007340 ORTHO05D008979 5.5e-20 103.6 126 42.1
BcaB01g05283 Brassica carinata HOM05D007340 ORTHO05D008979 3.0e-18 97.8 163 35.6
TPR.G40710 Trifolium pratense HOM05D007340 ORTHO05D008979 6.7e-18 96.7 69 62.3
ATR0582G031 Amborella trichopoda HOM05D007340 ORTHO05D008979 4.0e-15 87.4 263 25.9
HPP92_020723 Vanilla planifolia HOM05D007340 ORTHO05D008979 8.4e-13 79.7 225 27.6
Prupe.1G570100 Prunus persica HOM05D007340 ORTHO05D008979 9.3e-12 76.3 94 45.7
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 1.8e-10 72.0 205 27.3
Cc02_g04950 Coffea canephora HOM05D000104 ORTHO05D009920 5.1e-10 70.5 231 26.0
Actinidia21102 Actinidia chinensis HOM05D007202 ORTHO05D009125 2.5e-09 68.2 172 27.9
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.5e-09 68.2 156 30.8
Lsat_1_v5_gn_4_28380 Lactuca sativa HOM05D007340 ORTHO05D008979 3.3e-09 67.8 99 34.3
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 5.7e-09 67.0 154 28.6
TAR383G0223 Trochodendron aralioides HOM05D006819 ORTHO05D008763 1.3e-08 65.9 227 22.0
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 2.8e-08 64.7 212 23.1
C03p10720 Brassica napus HOM05D007340 ORTHO05D008979 3.7e-08 64.3 82 41.5
AUR62017720 Chenopodium quinoa HOM05D007202 ORTHO05D009125 4.8e-08 63.9 173 28.3
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 6.3e-08 63.5 205 26.3
Nn8g39431 Nelumbo nucifera HOM05D006819 ORTHO05D008763 8.2e-08 63.2 227 21.1
PSO782G4392 Papaver somniferum HOM05D007202 ORTHO05D009125 8.2e-08 63.2 166 25.9
GSVIVG01012216001 Vitis vinifera HOM05D005622 ORTHO05D002854 8.2e-08 63.2 144 25.7
TPR.G25953 Trifolium pratense HOM05D000104 ORTHO05D009920 1.1e-07 62.8 226 25.7
Lj3C848G3 Lonicera japonica HOM05D007202 ORTHO05D009125 1.4e-07 62.4 165 27.3
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.4e-07 62.4 118 32.2
Carub.0006s0720 Capsella rubella HOM05D007202 ORTHO05D009125 3.1e-07 61.2 192 25.0
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 3.1e-07 61.2 127 27.6
DCAR_026889 Daucus carota HOM05D007202 ORTHO05D009125 4.1e-07 60.8 254 24.8
TAR629G2305 Trochodendron aralioides HOM05D000104 ORTHO05D009920 4.1e-07 60.8 197 24.9
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 5.3e-07 60.5 136 28.7
FvH4_7g09470 Fragaria vesca HOM05D000104 ORTHO05D009920 6.9e-07 60.1 220 25.9
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 6.9e-07 60.1 166 26.5
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 6.9e-07 60.1 136 28.7
CDE09G0292 Ceratophyllum demersum HOM05D007212 ORTHO05D009094 9.0e-07 59.7 230 23.0
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 9.0e-07 59.7 200 25.5
Oeu037581.1 Olea europaea HOM05D007202 ORTHO05D009125 9.0e-07 59.7 142 28.2
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 9.0e-07 59.7 211 22.7
FAN06G4216 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.2e-06 59.3 220 25.9
FAN06G4654 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.2e-06 59.3 220 25.9
GSVIVG01026178001 Vitis vinifera HOM05D007202 ORTHO05D009125 1.2e-06 59.3 161 26.7
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.5e-06 58.9 97 36.1
Hund26048 Selenicereus undatus HOM05D007202 ORTHO05D009125 1.5e-06 58.9 172 28.5
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 1.5e-06 58.9 200 25.0
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 2.0e-06 58.5 200 25.0
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 2.0e-06 58.5 111 29.7
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 2.0e-06 58.5 93 28.0
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 2.6e-06 58.2 136 28.7
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 2.6e-06 58.2 89 29.2
FAN03G1668 Fragaria x ananassa HOM05D000104 ORTHO05D009920 2.6e-06 58.2 220 25.5
HanXRQChr16g0502661 Helianthus annuus HOM05D007128 ORTHO05D009059 3.4e-06 57.8 169 27.2
PGR004G2133 Punica granatum HOM05D000104 ORTHO05D009920 3.4e-06 57.8 205 24.9
SEGI_06868 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 3.4e-06 57.8 153 24.2
CANSAT80G0227 Cannabis sativa HOM05D005622 ORTHO05D002854 4.5e-06 57.4 144 22.9
Eucgr.J00877 Eucalyptus grandis HOM05D007202 ORTHO05D009125 4.5e-06 57.4 165 25.5
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 4.5e-06 57.4 166 25.9
SEGI_22909 Sequoiadendron giganteum HOM05D007340 ORTHO05D008979 4.5e-06 57.4 93 35.5
AT1G02060 Arabidopsis thaliana HOM05D000104 ORTHO05D009920 5.9e-06 57.0 208 25.0
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 5.9e-06 57.0 198 24.7
Gohir.A03G165700 Gossypium hirsutum HOM05D007202 ORTHO05D009125 5.9e-06 57.0 166 25.9
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 5.9e-06 57.0 111 28.8
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 7.6e-06 56.6 92 34.8
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 7.6e-06 56.6 187 25.7
PSO063G1738 Papaver somniferum HOM05D007202 ORTHO05D009125 7.6e-06 56.6 166 24.1
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 7.6e-06 56.6 136 27.9
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 1.0e-05 56.2 127 26.8
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 1.0e-05 56.2 108 29.6
CSS0032654 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 1.0e-05 56.2 173 27.2
FAN10G2081 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.0e-05 56.2 188 26.6
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 1.0e-05 56.2 111 28.8
SGA_v2.0_scaffold102G29846 Striga asiatica HOM05D007202 ORTHO05D009125 1.0e-05 56.2 172 25.6


User provided reference genes

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