Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 2.1e-64 248.8 121 100.0
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 4.1e-44 181.4 113 77.0
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 1.5e-25 119.8 113 56.6
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 1.9e-12 76.3 119 40.3
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 7.1e-12 74.3 123 40.7
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 9.2e-12 73.9 123 38.2
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.3e-10 70.1 125 38.4
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 2.3e-10 69.3 124 38.7
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 6.6e-10 67.8 124 37.1
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 8.6e-10 67.4 69 47.8
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 1.9e-09 66.2 58 44.8
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 7.3e-09 64.3 124 37.9
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 7.3e-09 64.3 111 40.5
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 7.3e-09 64.3 111 40.5
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 9.5e-09 63.9 119 34.5
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.1e-08 62.8 33 75.8
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.1e-08 62.8 33 75.8
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.1e-08 62.8 40 67.5
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 2.8e-08 62.4 105 39.0
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 2.8e-08 62.4 44 56.8
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 2.8e-08 62.4 51 56.9
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 3.6e-08 62.0 70 50.0
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 3.6e-08 62.0 83 38.6
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 6.2e-08 61.2 56 55.4
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 6.2e-08 61.2 40 65.0
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 8.1e-08 60.8 108 35.2
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 8.1e-08 60.8 61 50.8
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.1e-07 60.5 48 60.4
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.4e-07 60.1 44 54.5
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.8e-07 59.7 40 62.5
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 1.8e-07 59.7 52 48.1
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.8e-07 59.7 48 60.4
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.3e-07 59.3 69 43.5
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 2.3e-07 59.3 31 77.4
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 2.3e-07 59.3 45 57.8
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 2.3e-07 59.3 85 43.5
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 3.1e-07 58.9 60 45.0
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.1e-07 58.9 40 62.5
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 3.1e-07 58.9 81 44.4
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.1e-07 58.9 123 34.1
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 4.0e-07 58.5 70 44.3
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.0e-07 58.5 47 57.4
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 4.0e-07 58.5 33 72.7
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 5.2e-07 58.2 108 32.4
Thhalv10001747m.g Eutrema salsugineum HOM05D010682 ORTHO05D012785 5.2e-07 58.2 34 67.6
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 5.2e-07 58.2 51 51.0
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 5.2e-07 58.2 120 37.5
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 6.8e-07 57.8 49 55.1
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 8.9e-07 57.4 69 46.4
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 1.2e-06 57.0 51 47.1
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.2e-06 57.0 47 55.3
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.2e-06 57.0 47 55.3
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 1.2e-06 57.0 40 55.0
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 1.5e-06 56.6 45 53.3
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 1.5e-06 56.6 36 61.1
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 2.0e-06 56.2 41 63.4
BcaC02g12691 Brassica carinata HOM05D010682 ORTHO05D012785 2.6e-06 55.8 36 63.9
BcaC04g19548 Brassica carinata HOM05D010682 ORTHO05D012785 2.6e-06 55.8 36 63.9
A05p01410 Brassica napus HOM05D010682 ORTHO05D012785 2.6e-06 55.8 36 63.9
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 2.6e-06 55.8 43 53.5
C04p01580 Brassica napus HOM05D010682 ORTHO05D012785 2.6e-06 55.8 36 63.9
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 2.6e-06 55.8 43 53.5
BolC4t21810H Brassica oleracea HOM05D010682 ORTHO05D012785 2.6e-06 55.8 36 63.9
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 2.6e-06 55.8 43 53.5
BolC9t58317H Brassica oleracea HOM05D010682 ORTHO05D012785 2.6e-06 55.8 36 63.9
BraA05t19138Z Brassica rapa HOM05D010682 ORTHO05D012785 2.6e-06 55.8 36 63.9
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 2.6e-06 55.8 43 53.5
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 2.6e-06 55.8 29 69.0
BcaB01g03218 Brassica carinata HOM05D010682 ORTHO05D012785 3.4e-06 55.5 30 73.3
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 3.4e-06 55.5 87 35.6
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 3.4e-06 55.5 30 66.7
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 4.4e-06 55.1 40 52.5
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 4.4e-06 55.1 104 37.5
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 5.8e-06 54.7 48 47.9
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 5.8e-06 54.7 29 72.4
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 5.8e-06 54.7 29 72.4
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 7.6e-06 54.3 83 37.3
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 7.6e-06 54.3 39 51.3
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 7.6e-06 54.3 118 32.2
Sabra01G0069900 Salix brachista HOM05D007041 ORTHO05D008036 7.6e-06 54.3 33 66.7
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 7.6e-06 54.3 49 49.0
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 7.6e-06 54.3 39 53.8
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 9.9e-06 53.9 28 75.0


User provided reference genes

Program Settings