Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.7e-129 466.1 245 100.0
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 2.4e-112 409.1 246 89.8
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 2.5e-80 302.8 231 74.5
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 1.7e-68 263.5 248 64.9
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 5.8e-29 132.1 211 40.8
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.4e-27 126.7 174 48.3
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 2.1e-26 123.6 252 34.9
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.7e-26 123.2 273 35.5
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 5.1e-25 119.0 237 37.1
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.1e-22 111.3 153 46.4
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.4e-22 110.9 194 40.2
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 4.4e-21 105.9 195 40.0
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 7.6e-21 105.1 146 43.8
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 2.9e-20 103.2 139 47.5
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 3.8e-20 102.8 186 40.3
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 4.9e-20 102.4 167 41.9
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 2.4e-19 100.1 140 45.0
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 3.2e-19 99.8 147 40.8
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 9.2e-19 98.2 155 40.6
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.2e-18 97.8 143 41.3
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 1.6e-18 97.4 219 34.7
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 2.1e-18 97.1 237 34.6
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 3.5e-18 96.3 150 42.7
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.1e-16 91.3 221 34.8
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 1.9e-16 90.5 139 41.0
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 3.3e-16 89.7 140 40.7
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 4.3e-16 89.4 241 31.1
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 5.6e-16 89.0 211 34.1
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 7.3e-16 88.6 224 34.4
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 9.6e-16 88.2 220 35.0
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.7e-15 85.9 167 38.3
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 8.1e-15 85.1 200 35.0
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 8.1e-15 85.1 235 33.6
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-14 84.7 179 36.3
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 1.4e-14 84.3 147 37.4
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.8e-14 84.0 220 31.4
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 2.4e-14 83.6 150 40.0
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 4.0e-14 82.8 132 41.7
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.9e-14 82.0 179 35.8
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 9.0e-14 81.6 132 41.7
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 1.2e-13 81.3 134 41.8
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 4.4e-13 79.3 220 32.7
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 4.4e-13 79.3 158 36.7
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.4e-13 79.3 158 36.7
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 5.8e-13 79.0 152 39.5
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 5.8e-13 79.0 152 39.5
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 5.8e-13 79.0 137 37.2
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.6e-13 78.6 179 35.2
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 2.9e-12 76.6 232 30.2
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 4.9e-12 75.9 176 34.7
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 4.9e-12 75.9 139 40.3
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 4.9e-12 75.9 177 33.9
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 4.9e-12 75.9 146 34.2
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 4.9e-12 75.9 215 30.7
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 1.1e-11 74.7 202 31.2
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 2.4e-11 73.6 149 35.6
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 4.2e-11 72.8 152 35.5
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 4.2e-11 72.8 152 35.5
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 5.4e-11 72.4 158 33.5
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 7.1e-11 72.0 125 40.0
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 9.3e-11 71.6 158 33.5
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 9.3e-11 71.6 158 33.5
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 9.3e-11 71.6 148 36.5
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 2.1e-10 70.5 64 59.4
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 3.5e-10 69.7 216 31.5
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 6.0e-10 68.9 152 40.1
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 6.0e-10 68.9 152 40.1
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 6.0e-10 68.9 232 27.6
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 7.8e-10 68.6 37 89.2
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 1.3e-09 67.8 184 29.9
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 2.3e-09 67.0 143 35.7
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 3.0e-09 66.6 50 66.0
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 3.9e-09 66.2 50 62.0
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 3.9e-09 66.2 147 34.7
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 5.1e-09 65.9 136 34.6
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 6.6e-09 65.5 144 34.0
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 6.6e-09 65.5 55 61.8
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 8.7e-09 65.1 50 66.0
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 1.1e-08 64.7 77 48.1
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 1.9e-08 63.9 45 66.7
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.9e-08 63.9 147 34.0
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 2.5e-08 63.5 45 68.9
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.5e-08 63.5 55 60.0
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 3.3e-08 63.2 46 65.2
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 4.3e-08 62.8 70 50.0
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 4.3e-08 62.8 233 27.9
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 9.6e-08 61.6 54 61.1
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 9.6e-08 61.6 144 33.3
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 1.3e-07 61.2 44 63.6
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-07 61.2 44 63.6
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-07 61.2 44 63.6
Sabra04G0064600 Salix brachista HOM05D003238 ORTHO05D003571 1.3e-07 61.2 58 56.9
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.6e-07 60.8 45 64.4
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.8e-07 60.1 44 61.4
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 4.8e-07 59.3 50 62.0
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 6.2e-07 58.9 55 58.2
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 8.1e-07 58.5 53 52.8
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 3.1e-06 56.6 152 30.3
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 4.0e-06 56.2 147 32.7
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 4.0e-06 56.2 83 36.1
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 6.9e-06 55.5 66 50.0
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 6.9e-06 55.5 87 37.9
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 9.0e-06 55.1 46 58.7


User provided reference genes

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