Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 5075.4 2492 100.0
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 4889.3 2492 96.3
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 4441.7 2520 87.2
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 4161.7 2530 81.3
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 2843.9 2562 57.3
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 2820.8 2560 57.5
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 2796.9 2558 56.5
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 2791.9 2638 55.5
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 2779.6 2558 55.7
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2774.2 2558 56.2
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2768.4 2558 55.6
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2766.1 2561 55.6
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 2747.2 2565 56.2
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2742.2 2560 55.4
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2741.1 2560 55.3
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2735.3 2569 54.9
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 2674.8 2562 55.1
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 2654.8 2590 54.8
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 2649.0 2576 53.9
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2647.5 2576 53.9
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 2645.9 2562 54.0
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 2645.2 2567 55.2
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 2644.0 2569 54.0
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2634.0 2564 53.8
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 2633.2 2570 53.5
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 2631.3 2424 56.4
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 2626.7 2548 53.3
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 2625.5 2553 54.0
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 2617.0 2578 53.3
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 2574.7 2538 53.5
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 2545.4 2562 53.0
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 2541.5 2538 52.8
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 2533.8 2564 52.1
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 2524.2 2535 52.8
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 2511.5 2515 53.5
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 2473.0 2542 52.1
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2448.7 2543 51.2
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2447.5 2539 51.3
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 2447.2 2536 51.4
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 2434.1 2537 51.7
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 2420.2 2566 51.0
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2409.8 2510 51.2
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 2344.7 2628 48.9
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 2312.3 2577 49.2
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 2301.9 2580 49.1
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2293.1 2395 51.3
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2238.8 2576 48.3
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 2235.7 2567 48.3
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2205.6 2537 48.0
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2204.1 2531 48.2
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 2199.1 2572 47.7
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 2195.6 2565 47.8
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 2189.1 2531 47.3
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 2187.5 2554 47.1
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 2186.8 2573 47.6
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 2178.7 2533 47.3
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 2175.2 2545 47.1
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 2171.7 2571 46.7
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 2169.0 2548 47.3
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 2149.4 2551 47.2
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 2134.8 2568 46.5
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 2125.9 2534 48.1
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 2109.0 2549 47.1
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 2098.6 2525 46.7
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2095.1 2530 46.6
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2094.3 2525 46.7
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2091.2 2565 45.5
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 2085.8 2565 45.3
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 2084.3 2531 46.6
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 2071.2 2560 45.7
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 2062.0 2517 46.2
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 2034.2 2531 45.7
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 2003.8 1935 55.0
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 1988.4 2558 44.2
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1966.8 2554 44.6
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 1944.1 2395 46.6
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 1925.6 2555 43.9
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 1895.9 2502 44.2
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1745.3 1954 49.6
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1744.2 2541 40.7
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1740.3 1877 50.0
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1641.3 1925 47.8
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1600.9 2551 38.2
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1510.4 2548 37.3
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1391.3 1542 50.1
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1360.9 1523 49.8
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1354.0 1520 50.5
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1330.1 1363 50.6
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1327.8 1322 52.3
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1212.6 1364 47.3
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1161.7 1353 47.2
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1078.5 1102 54.2
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 3.2e-308 1063.1 2736 29.8
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 5.2e-303 1045.8 1358 44.7
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.5e-302 1044.3 1814 37.8
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 4.2e-292 1009.6 1067 52.9
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 1.2e-270 938.3 1068 48.1
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 1.2e-270 938.3 1068 48.1
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 1.0e-261 908.7 1190 42.7
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.4e-250 871.7 1090 46.7
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 8.6e-229 799.3 1012 43.1
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 3.5e-222 777.3 1594 32.9
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.4e-210 738.8 1205 37.8
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 8.6e-205 719.5 548 66.4
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.1e-202 712.6 573 62.3
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 8.4e-192 676.4 629 54.8
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 7.6e-177 626.7 1689 29.7
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 3.2e-175 621.3 556 56.8
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.9e-168 598.2 548 58.9
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 5.1e-165 587.4 683 45.8
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.6e-163 582.4 1083 36.7
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 7.9e-158 563.5 763 45.3
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 1.3e-152 546.2 460 62.2
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 5.9e-137 494.2 457 51.0
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 3.6e-134 485.0 429 55.9
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 1.4e-130 473.0 752 36.3
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 3.3e-124 451.8 1754 26.5
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 3.7e-115 421.8 953 31.4
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 9.8e-108 397.1 515 46.2
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 3.3e-103 382.1 292 64.0
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 1.8e-93 349.7 223 76.7
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.5e-81 308.9 197 77.7
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.2e-75 289.7 230 62.6
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 1.5e-71 276.9 380 44.2
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 9.6e-71 274.2 177 72.9
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.7e-67 263.5 272 54.4
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 1.2e-65 257.3 195 63.1
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 2.8e-62 246.1 628 30.1
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 3.6e-62 245.7 195 61.0
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 1.8e-53 216.9 231 47.6
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 9.3e-50 204.5 412 38.1
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 2.8e-46 193.0 120 74.2
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 7.6e-44 184.9 259 38.2
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 2.2e-43 183.3 309 39.8
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.6e-41 177.2 136 66.2
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 1.0e-35 157.9 539 27.8
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.8e-35 156.0 114 64.9
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 9.4e-34 151.4 114 64.0
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 9.4e-34 151.4 114 64.9
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 1.0e-32 147.9 235 36.6
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 3.9e-32 146.0 102 74.5
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 7.4e-31 141.7 181 39.8
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 7.4e-31 141.7 181 39.8
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.8e-29 137.1 266 33.5
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 6.9e-29 135.2 88 75.0
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.3e-27 131.0 506 27.3
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 1.3e-27 131.0 239 36.4
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 2.9e-27 129.8 74 81.1
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.8e-24 120.6 103 60.2
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 3.3e-23 116.3 222 31.5
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 4.4e-23 115.9 137 48.9
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 8.2e-22 111.7 312 28.2
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 7.0e-21 108.6 118 50.8
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 5.9e-20 105.5 292 25.3
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 1.5e-15 90.9 151 42.4
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 5.7e-15 89.0 121 42.1
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 1.8e-13 84.0 120 45.0
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 3.1e-13 83.2 57 78.9
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 3.1e-13 83.2 130 37.7
Psat0ss888g0080 Pisum sativum HOM05D004435 ORTHO05D005103 4.5e-12 79.3 84 48.8
Psat5g020760 Pisum sativum HOM05D004435 ORTHO05D005103 2.2e-11 77.0 84 48.8
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 3.2e-10 73.2 47 68.1


User provided reference genes

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