Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 2192.2 1086 100.0
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1989.5 1078 93.3
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1923.7 1084 87.8
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1877.8 1078 88.2
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1663.7 1087 75.7
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1660.2 1090 75.2
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1650.2 1086 75.0
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1647.5 1087 75.1
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1641.7 1096 74.5
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1617.1 1119 72.1
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1616.3 1091 73.7
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1615.9 1076 74.4
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1605.9 1088 74.0
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1603.6 1083 74.0
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1603.2 1091 73.1
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1602.8 1087 72.8
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1602.4 1086 73.9
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1587.8 1083 72.6
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1583.9 1111 71.5
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1583.5 1081 71.5
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1575.5 1076 72.0
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1573.5 1083 72.2
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1573.1 1077 72.9
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1572.8 1085 72.8
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1570.8 1075 72.3
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1568.5 1078 72.4
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1568.5 1078 72.2
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1568.1 1094 71.9
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1566.6 1078 72.3
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1563.9 1088 71.5
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1563.1 1084 71.5
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1562.7 1086 71.7
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1561.6 1102 70.7
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1561.2 1080 72.5
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1556.6 1078 71.8
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1555.8 1088 71.0
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1553.5 1079 72.1
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1553.1 1083 71.9
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1552.7 1089 71.0
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1550.8 1075 71.3
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1550.4 1092 71.2
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1550.0 1083 71.3
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1549.6 1075 71.3
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1548.5 1083 71.7
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1547.3 1083 71.7
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1543.9 1089 70.6
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1542.7 1088 70.6
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1542.3 1089 70.3
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1538.9 1118 69.8
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1538.1 1081 70.5
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1533.1 1085 70.4
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1532.7 1083 70.5
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1530.8 1082 69.9
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1530.0 1084 71.7
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1527.7 1085 70.0
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1527.3 1080 69.6
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1526.9 1087 70.0
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1526.5 1090 70.1
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1523.8 1085 69.8
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1523.1 1080 70.0
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1518.8 1072 71.6
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1518.8 1089 69.1
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1516.5 1072 70.8
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1513.0 1084 70.1
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1503.4 1086 68.5
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1497.6 1094 68.2
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1489.2 1084 68.1
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1486.9 1086 69.1
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1483.4 1078 68.5
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1474.5 1077 69.0
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1473.8 1073 69.8
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1471.8 1083 68.2
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1466.1 1077 68.8
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1466.1 1078 69.1
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1462.2 1086 66.8
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1453.3 1072 68.8
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1446.8 1085 67.6
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1443.3 1076 68.0
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1441.0 1085 67.3
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1435.6 948 74.1
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1435.2 1210 62.7
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1429.1 1078 67.7
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1393.3 1090 64.5
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1382.5 1080 64.4
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1374.4 942 71.3
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1372.1 1086 65.4
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1369.4 1140 61.8
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1358.2 1088 62.8
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1332.4 942 70.3
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1329.7 1088 61.2
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1270.4 1210 56.1
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1217.2 1072 58.5
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1179.1 758 76.0
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1174.1 977 62.6
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1130.9 755 73.2
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1128.2 1089 56.8
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 9.3e-305 1050.4 754 69.2
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 1.8e-295 1019.6 718 69.8
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 1.8e-287 993.0 1084 48.5
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 7.2e-273 944.5 1088 48.1
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 6.5e-266 921.4 1022 53.2
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 3.2e-249 865.9 655 71.0
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 6.1e-248 861.7 626 68.2
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 4.9e-237 825.5 1025 45.7
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 7.5e-230 801.6 713 57.5
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 1.4e-220 770.8 538 71.9
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 1.6e-208 730.7 519 68.8
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 4.2e-188 662.9 1507 32.4
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 3.4e-166 590.1 398 74.6
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 7.0e-135 486.1 344 72.4
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 7.3e-84 316.6 194 77.8
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 9.3e-55 219.9 149 71.1
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.7e-40 172.6 113 77.0
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.9e-23 115.9 59 86.4
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 7.5e-20 104.0 54 85.2
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 6.1e-14 84.3 65 56.9
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 7.5e-12 77.4 44 72.7
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 7.5e-12 77.4 44 72.7
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.4e-10 72.4 89 43.8
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 2.4e-10 72.4 73 50.7
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 5.4e-10 71.2 40 75.0
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 5.4e-10 71.2 207 29.0
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 5.4e-10 71.2 73 49.3


User provided reference genes

Program Settings