Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 5.2e-168 594.3 309 100.0
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 3.4e-143 511.9 311 87.1
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 8.2e-97 357.8 326 66.0
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 3.8e-62 242.7 308 55.8
Sed0025990 Sechium edule HOM05D004242 ORTHO05D004349 4.1e-56 222.6 312 50.6
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 6.8e-35 152.1 309 43.0
CsaV3_3G007810 Cucumis sativus L. HOM05D030996 ORTHO05D004349 1.9e-29 134.0 301 39.5
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.1e-24 118.2 316 36.4
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 7.8e-23 112.1 171 45.6
CsaV3_3G007820 Cucumis sativus L. HOM05D030996 ORTHO05D004349 1.7e-22 110.9 311 37.0
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 4.0e-19 99.8 307 34.2
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.5e-18 97.8 259 34.4
Sed0027906 Sechium edule HOM05D030996 ORTHO05D004349 3.8e-17 93.2 303 33.0
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.2e-16 90.1 300 34.3
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 4.6e-15 86.3 352 31.8
Sed0013414 Sechium edule HOM05D004242 ORTHO05D004349 1.1e-13 81.6 288 33.7
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 4.3e-13 79.7 326 31.0
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 9.6e-13 78.6 251 33.5
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.6e-13 78.6 251 33.5
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.6e-13 78.6 251 33.5
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 1.2e-12 78.2 248 31.5
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.2e-12 75.9 309 31.1
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 1.1e-11 75.1 249 34.1
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 1.1e-11 75.1 343 30.9
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.4e-11 73.9 319 31.0
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 2.4e-11 73.9 344 30.5
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 6.9e-11 72.4 307 30.6
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.9e-11 72.4 254 32.3
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 1.2e-10 71.6 322 31.1
MELO3C005998.2 Cucumis melo HOM05D030996 ORTHO05D004349 1.2e-10 71.6 286 31.5
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.6e-10 70.5 198 33.8
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 3.4e-10 70.1 258 31.8
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 5.8e-10 69.3 241 30.3
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.9e-10 68.6 258 31.4
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 9.9e-10 68.6 199 34.7
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.9e-09 67.0 189 33.3
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 3.8e-09 66.6 243 32.5
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 3.8e-09 66.6 232 34.9
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.9e-09 66.2 367 28.6
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 6.4e-09 65.9 230 31.3
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 6.4e-09 65.9 208 34.6
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 6.4e-09 65.9 208 35.1
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 8.4e-09 65.5 246 30.9
Sed0013842 Sechium edule HOM05D004242 ORTHO05D004349 8.4e-09 65.5 89 48.3
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 1.4e-08 64.7 194 34.0
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 1.4e-08 64.7 238 32.8
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.9e-08 64.3 208 34.1
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 1.9e-08 64.3 200 33.0
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.9e-08 64.3 294 29.9
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 2.4e-08 63.9 330 29.1
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 3.2e-08 63.5 212 33.0
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 3.2e-08 63.5 257 30.7
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.2e-08 63.2 190 31.6
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 4.2e-08 63.2 212 30.7
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 4.2e-08 63.2 254 30.7
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 5.4e-08 62.8 337 31.2
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 5.4e-08 62.8 243 31.7
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 5.4e-08 62.8 323 28.5
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 7.1e-08 62.4 271 31.0
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 7.1e-08 62.4 325 29.8
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 7.1e-08 62.4 353 26.6
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 7.1e-08 62.4 306 27.1
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 1.6e-07 61.2 325 27.4
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 1.6e-07 61.2 216 31.5
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 1.6e-07 61.2 365 27.7
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.1e-07 60.8 190 31.6
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 2.1e-07 60.8 186 33.9
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 2.7e-07 60.5 231 31.6
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 2.7e-07 60.5 192 31.8
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 4.6e-07 59.7 197 33.5
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.0e-07 59.3 367 27.8
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 6.0e-07 59.3 207 34.3
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 7.8e-07 58.9 233 30.9
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 7.8e-07 58.9 299 28.4
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 7.8e-07 58.9 232 31.5
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 1.0e-06 58.5 203 30.5
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 1.0e-06 58.5 234 31.2
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 1.3e-06 58.2 230 31.7
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 1.3e-06 58.2 230 31.7
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 1.3e-06 58.2 233 30.9
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 1.7e-06 57.8 106 40.6
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.7e-06 57.8 312 28.8
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 1.7e-06 57.8 280 30.0
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 2.3e-06 57.4 232 29.7
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 3.9e-06 56.6 246 29.3
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 5.1e-06 56.2 274 31.0
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 5.1e-06 56.2 274 31.0
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 5.1e-06 56.2 113 33.6
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 6.6e-06 55.8 253 30.8
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 6.6e-06 55.8 347 29.4
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 8.7e-06 55.5 117 33.3
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 8.7e-06 55.5 243 30.0


User provided reference genes

Program Settings