Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G007690 Cucumis sativus L. HOM05D007943 ORTHO05D010047 2.6e-65 251.9 125 100.0
MELO3C005988.2 Cucumis melo HOM05D007943 ORTHO05D010047 7.7e-62 240.4 125 96.0
Sed0006019 Sechium edule HOM05D007943 ORTHO05D010047 1.2e-35 153.3 126 69.0
ClCG05G000500 Citrullus lanatus HOM05D007943 ORTHO05D010047 1.5e-33 146.4 204 44.6
CsaV3_3G007710 Cucumis sativus L. HOM05D007943 ORTHO05D010047 4.1e-15 85.1 102 44.1
Sed0008180 Sechium edule HOM05D007943 ORTHO05D010047 1.3e-13 80.1 109 42.2
QL08p046777 Quercus lobata HOM05D007943 ORTHO05D010047 8.6e-13 77.4 87 44.8
Haze_15717 Corylus avellana HOM05D007943 ORTHO05D010047 9.5e-12 73.9 81 44.4
GSVIVG01027420001 Vitis vinifera HOM05D007943 ORTHO05D010047 2.1e-11 72.8 100 34.0
Glyma.16G020300 Glycine max HOM05D007943 ORTHO05D010047 3.6e-11 72.0 86 39.5
Prupe.2G195800 Prunus persica HOM05D007943 ORTHO05D010047 4.7e-11 71.6 68 50.0
Gohir.D07G139100 Gossypium hirsutum HOM05D007943 ORTHO05D010047 6.2e-11 71.2 105 34.3
Gorai.001G151200 Gossypium raimondii HOM05D007943 ORTHO05D010047 6.2e-11 71.2 105 34.3
Atru.chr5.749 Acer truncatum HOM05D007943 ORTHO05D010047 1.4e-10 70.1 80 40.0
Gohir.A07G134500 Gossypium hirsutum HOM05D007943 ORTHO05D010047 4.0e-10 68.6 103 33.0
RcHm_v2.0_Chr1g0360861 Rosa chinensis HOM05D007943 ORTHO05D010047 4.0e-10 68.6 76 39.5
Lalb_Chr10g0100821 Lupinus albus HOM05D007943 ORTHO05D010047 5.2e-10 68.2 79 38.0
FvH4_7g17420 Fragaria vesca HOM05D007943 ORTHO05D010047 6.8e-10 67.8 106 32.1
FAN01G2944 Fragaria x ananassa HOM05D007943 ORTHO05D010047 6.8e-10 67.8 76 38.2
FAN06G1823 Fragaria x ananassa HOM05D007943 ORTHO05D010047 6.8e-10 67.8 106 32.1
FAN10G1708 Fragaria x ananassa HOM05D007943 ORTHO05D010047 6.8e-10 67.8 76 38.2
CiPaw.01G081100 Carya illinoinensis HOM05D007943 ORTHO05D010047 8.9e-10 67.4 79 39.2
Glyma.07G051200 Glycine max HOM05D007943 ORTHO05D010047 8.9e-10 67.4 81 39.5
arahy.Tifrunner.gnm1.ann1.FJCJ23 Arachis hypogaea HOM05D007943 ORTHO05D010047 1.5e-09 66.6 87 39.1
Manes.05G017800 Manihot esculenta HOM05D007943 ORTHO05D010047 1.5e-09 66.6 78 41.0
TPR.G4732 Trifolium pratense HOM05D007943 ORTHO05D010047 1.5e-09 66.6 80 40.0
Duzib133G1419 Durio zibethinus HOM05D007943 ORTHO05D010047 2.0e-09 66.2 102 33.3
FAN10G0207 Fragaria x ananassa HOM05D007943 ORTHO05D010047 2.0e-09 66.2 76 36.8
TPR.G25267 Trifolium pratense HOM05D007943 ORTHO05D010047 2.6e-09 65.9 88 39.8
FAN03G2903 Fragaria x ananassa HOM05D007943 ORTHO05D010047 3.4e-09 65.5 76 36.8
Cfa003750 Carpinus fangiana HOM05D007943 ORTHO05D010047 5.8e-09 64.7 75 37.3
Gorai.007G112000 Gossypium raimondii HOM05D007943 ORTHO05D010047 5.8e-09 64.7 100 37.0
Gohir.D11G104700 Gossypium hirsutum HOM05D007943 ORTHO05D010047 7.5e-09 64.3 88 37.5
Phvul.010G118200 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 7.5e-09 64.3 72 40.3
Potri.002G177700 Populus trichocarpa HOM05D007943 ORTHO05D010047 7.5e-09 64.3 65 40.0
Gohir.A11G100000 Gossypium hirsutum HOM05D007943 ORTHO05D010047 9.9e-09 63.9 103 36.9
MD01G1087200 Malus domestica HOM05D007943 ORTHO05D010047 9.9e-09 63.9 52 51.9
MD07G1157400 Malus domestica HOM05D007943 ORTHO05D010047 9.9e-09 63.9 90 37.8
Oeu042966.1 Olea europaea HOM05D007943 ORTHO05D010047 2.9e-08 62.4 80 37.5
Psat4g217240 Pisum sativum HOM05D007943 ORTHO05D010047 6.4e-08 61.2 85 38.8
Thecc.01G335100 Theobroma cacao HOM05D007943 ORTHO05D010047 6.4e-08 61.2 48 47.9
Manes.01G241300 Manihot esculenta HOM05D007943 ORTHO05D010047 8.3e-08 60.8 96 34.4
AL1G11360 Arabidopsis lyrata HOM05D007943 ORTHO05D010047 1.9e-07 59.7 81 38.3
Potri.014G104100 Populus trichocarpa HOM05D007943 ORTHO05D010047 1.9e-07 59.7 79 32.9
Ciclev10022962m.g Citrus clementina HOM05D007943 ORTHO05D010047 2.4e-07 59.3 76 38.2
Medtr8g024630 Medicago truncatula HOM05D007943 ORTHO05D010047 2.4e-07 59.3 100 31.0
Phvul.006G116500 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 4.1e-07 58.5 77 33.8
A09p68930 Brassica napus HOM05D007943 ORTHO05D010047 5.4e-07 58.2 78 32.1
BolC8t52866H Brassica oleracea HOM05D007943 ORTHO05D010047 5.4e-07 58.2 78 35.9
Carub.0001s0107 Capsella rubella HOM05D007943 ORTHO05D010047 5.4e-07 58.2 56 44.6
CSS0046577 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 1.6e-06 56.6 87 40.2
Glyma.03G260100 Glycine max HOM05D007943 ORTHO05D010047 2.1e-06 56.2 63 36.5
Lalb_Chr02g0157681 Lupinus albus HOM05D007943 ORTHO05D010047 2.1e-06 56.2 75 36.0
Sabra02G0135900 Salix brachista HOM05D007943 ORTHO05D010047 3.5e-06 55.5 52 42.3
COL.COLO4_06217 Corchorus olitorius HOM05D007943 ORTHO05D010047 6.0e-06 54.7 91 35.2
TAR629G3284 Trochodendron aralioides HOM05D007943 ORTHO05D010047 6.0e-06 54.7 81 37.0
Glyma.19G259000 Glycine max HOM05D007943 ORTHO05D010047 7.8e-06 54.3 55 34.5
Solyc10g009260.1 Solanum lycopersicum HOM05D007943 ORTHO05D010047 7.8e-06 54.3 46 43.5


User provided reference genes

Program Settings