Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 6.1e-191 670.6 329 100.0
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 3.6e-183 644.8 329 96.4
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 1.7e-169 599.4 326 89.9
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 2.8e-143 512.3 327 79.5
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 2.4e-123 446.0 343 67.3
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 2.1e-122 443.0 342 66.7
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 3.0e-121 439.1 327 68.2
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 2.8e-119 432.6 337 66.2
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 1.4e-118 430.3 314 67.8
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 1.2e-117 427.2 306 68.6
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 1.2e-117 427.2 293 72.0
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 9.9e-117 424.1 340 65.6
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 1.7e-116 423.3 344 61.9
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 2.2e-116 422.9 319 66.1
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 1.4e-115 420.2 289 71.6
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 2.4e-115 419.5 318 65.7
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 7.1e-115 417.9 322 65.2
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 1.2e-114 417.2 343 61.2
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 1.2e-114 417.2 292 68.8
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 1.2e-114 417.2 292 68.8
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 1.6e-114 416.8 289 70.9
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 1.6e-114 416.8 293 68.3
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 2.1e-114 416.4 336 64.6
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 2.1e-114 416.4 343 60.9
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 1.0e-113 414.1 292 68.5
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 1.0e-113 414.1 361 60.9
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 1.7e-113 413.3 344 60.8
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 1.7e-113 413.3 364 60.7
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 3.9e-113 412.1 293 68.6
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 5.1e-113 411.8 344 61.6
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 5.1e-113 411.8 344 61.6
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 6.6e-113 411.4 312 65.7
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 1.1e-112 410.6 291 67.7
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 1.1e-112 410.6 291 68.0
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 1.5e-112 410.2 312 65.7
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 1.5e-112 410.2 351 61.3
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 3.3e-112 409.1 287 71.1
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 1.2e-111 407.1 325 63.4
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 2.1e-111 406.4 291 67.4
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 6.9e-110 401.4 290 66.2
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 6.9e-110 401.4 290 66.9
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 1.2e-109 400.6 281 70.1
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 2.0e-109 399.8 372 60.8
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 3.4e-109 399.1 313 64.2
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 5.8e-109 398.3 286 68.5
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 1.7e-108 396.7 289 68.2
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 3.8e-108 395.6 281 69.8
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 3.8e-108 395.6 289 66.4
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 4.9e-108 395.2 281 69.4
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 6.4e-108 394.8 315 64.1
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 6.4e-108 394.8 283 67.5
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 1.4e-107 393.7 324 63.3
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 2.4e-107 392.9 281 69.4
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 7.1e-107 391.3 319 63.3
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 2.1e-106 389.8 281 67.6
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 2.7e-106 389.4 281 68.3
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 4.6e-106 388.7 283 68.2
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 1.3e-105 387.1 287 65.5
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 2.3e-105 386.3 319 63.3
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 3.9e-105 385.6 321 61.4
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 5.1e-105 385.2 319 63.0
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 8.7e-105 384.4 317 62.8
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 1.1e-104 384.0 349 56.7
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 2.5e-104 382.9 312 61.5
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 4.3e-104 382.1 292 64.7
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 7.3e-104 381.3 312 61.5
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 1.6e-103 380.2 290 65.5
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 1.6e-103 380.2 284 68.3
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 3.6e-103 379.0 287 64.1
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 5.3e-102 375.2 290 64.5
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 3.8e-100 369.0 289 65.7
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 1.1e-99 367.5 283 62.2
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 3.2e-99 365.9 315 59.7
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 9.3e-99 364.4 287 64.5
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 6.0e-98 361.7 319 57.7
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 6.0e-98 361.7 330 57.3
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 5.1e-97 358.6 338 56.5
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 2.5e-96 356.3 321 60.4
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 1.3e-92 344.0 297 58.9
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 1.7e-92 343.6 281 63.3
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 2.7e-90 336.3 303 57.1
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 4.6e-90 335.5 273 61.9
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 3.7e-87 325.9 243 66.3
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 1.5e-85 320.5 247 64.8
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 2.0e-85 320.1 309 52.4
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 1.7e-84 317.0 291 56.4
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 2.2e-84 316.6 273 57.9
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 8.2e-79 298.1 348 49.7
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 1.1e-78 297.7 271 56.8
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 1.0e-76 291.2 282 54.6
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.2e-76 290.0 236 61.0
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 6.7e-73 278.5 303 46.2
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 2.5e-72 276.6 261 53.3
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 2.8e-71 273.1 299 46.2
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 4.8e-71 272.3 199 65.3
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 3.1e-62 243.0 337 41.2
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 2.9e-60 236.5 299 42.8
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 5.7e-56 222.2 272 42.3
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 9.7e-56 221.5 147 69.4
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 2.2e-52 210.3 207 56.0
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 1.5e-51 207.6 154 64.3
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 1.4e-49 201.1 136 68.4
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 1.3e-47 194.5 280 40.0
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 9.8e-40 168.3 368 32.1
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 9.8e-32 141.7 167 44.3
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 2.4e-30 137.1 298 33.9
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 9.2e-30 135.2 145 47.6
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 7.5e-24 115.5 99 57.6
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 5.4e-22 109.4 82 62.2
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 6.6e-20 102.4 67 62.7
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 2.3e-12 77.4 150 33.3
CSS0007107 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 2.3e-09 67.4 61 59.0
CSS0022959 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 2.3e-09 67.4 61 59.0
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 2.3e-09 67.4 150 33.3
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 9.9e-08 62.0 150 33.3
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 3.7e-07 60.1 148 30.4
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.1e-06 58.5 154 31.8
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 2.4e-06 57.4 146 26.7
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 2.4e-06 57.4 152 28.9
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 3.2e-06 57.0 150 30.0
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 4.1e-06 56.6 153 31.4
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 4.1e-06 56.6 150 31.3
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 4.1e-06 56.6 150 31.3
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 7.1e-06 55.8 153 31.4
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 7.1e-06 55.8 153 30.1
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 7.1e-06 55.8 153 29.4
SalBow8G1474 Salvia bowleyana HOM05D000221 ORTHO05D359434 7.1e-06 55.8 59 45.8
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 9.2e-06 55.5 153 30.7


User provided reference genes

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