Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 0.0e+00 1238.0 654 100.0
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 0.0e+00 1188.3 662 92.4
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 0.0e+00 1140.9 654 89.6
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 5.6e-297 1023.8 650 81.5
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 5.7e-249 864.4 645 69.8
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 2.5e-244 849.0 652 66.9
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 8.8e-242 840.5 664 66.1
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.0e-237 827.0 662 65.6
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 6.1e-235 817.8 651 65.7
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 1.0e-234 817.0 659 63.4
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 1.5e-233 813.1 651 64.5
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 5.7e-233 811.2 666 64.1
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 2.2e-232 809.3 655 63.2
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 4.8e-232 808.1 651 64.8
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 1.1e-231 807.0 666 66.8
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 9.1e-231 803.9 663 64.6
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.7e-229 799.7 662 64.4
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 8.5e-229 797.3 653 65.2
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 2.1e-227 792.7 662 64.2
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 2.3e-226 789.3 649 64.3
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 5.2e-226 788.1 641 64.4
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 4.5e-222 775.0 660 62.0
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 3.2e-220 768.8 649 64.4
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 5.5e-220 768.1 669 60.5
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.6e-219 766.5 658 65.3
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.6e-219 766.5 632 64.4
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 3.6e-219 765.4 653 60.8
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 2.3e-218 762.7 667 61.8
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 4.4e-217 758.4 637 61.9
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 5.4e-215 751.5 646 61.5
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 7.0e-215 751.1 658 60.3
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 9.2e-215 750.7 655 60.0
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 1.6e-214 750.0 658 61.7
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 5.9e-214 748.0 669 59.0
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 1.7e-213 746.5 634 63.7
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.7e-213 746.5 662 60.0
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 2.5e-212 742.7 643 59.6
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 7.3e-212 741.1 677 60.3
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 1.4e-210 736.9 651 59.8
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 1.8e-210 736.5 654 60.6
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 4.0e-210 735.3 648 59.3
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 3.4e-209 732.3 646 60.1
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 4.4e-209 731.9 668 59.1
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 7.5e-209 731.1 648 60.5
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 9.8e-209 730.7 655 61.2
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 9.8e-209 730.7 655 61.2
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 1.3e-208 730.3 649 61.5
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 3.7e-208 728.8 653 60.8
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 4.9e-208 728.4 661 58.2
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 8.3e-208 727.6 637 60.6
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 1.1e-207 727.2 649 59.3
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 2.4e-207 726.1 661 59.6
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 4.1e-207 725.3 654 60.9
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 1.6e-206 723.4 646 60.1
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 1.0e-205 720.7 649 60.1
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.5e-204 716.8 650 59.4
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 3.3e-204 715.7 652 59.4
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 1.2e-203 713.8 647 58.6
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 2.8e-203 712.6 654 63.3
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 2.8e-203 712.6 656 59.1
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 3.6e-203 712.2 650 60.9
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 1.4e-202 710.3 653 59.9
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 1.5e-201 706.8 647 57.5
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 2.6e-201 706.1 651 59.6
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 3.4e-201 705.7 663 57.8
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 5.8e-201 704.9 672 57.0
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.9e-200 702.6 696 56.9
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 3.7e-200 702.2 655 59.1
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 4.1e-199 698.7 655 58.8
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 5.4e-199 698.4 658 58.2
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.2e-198 697.2 614 61.6
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 2.7e-198 696.0 673 56.9
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 1.9e-196 689.9 655 58.3
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 3.3e-196 689.1 645 57.4
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.6e-195 686.8 655 58.0
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 4.7e-195 685.3 655 58.2
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 1.1e-194 684.1 674 55.8
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.7e-192 676.8 655 56.6
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 1.1e-191 674.1 491 69.9
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.4e-183 647.1 511 65.0
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 7.1e-183 644.8 650 53.2
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 5.6e-180 635.2 588 57.0
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.1e-178 629.4 565 58.4
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 2.6e-177 626.3 684 51.8
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 4.9e-176 622.1 656 53.4
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 1.1e-175 620.9 533 61.4
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 3.0e-173 612.8 489 63.0
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 1.1e-172 610.9 683 51.7
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 3.3e-172 609.4 648 54.2
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 7.1e-167 591.7 497 60.2
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 7.4e-164 581.6 695 48.5
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 1.8e-162 577.0 656 49.7
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 1.4e-159 567.4 532 58.3
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 3.9e-157 559.3 652 47.2
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 8.2e-147 525.0 533 53.7
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.9e-143 513.8 600 48.3
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 7.4e-140 501.9 482 56.6
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 6.1e-126 455.7 641 41.5
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 4.4e-124 449.5 444 57.2
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 8.0e-118 428.7 494 50.6
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 1.7e-112 411.0 752 37.4
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 2.0e-108 397.5 281 69.4
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 5.7e-108 396.0 681 41.0
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 5.4e-98 362.8 577 39.0
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 1.7e-91 341.3 338 55.0
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.7e-91 341.3 336 56.8
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 3.7e-91 340.1 388 52.8
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 3.9e-88 330.1 382 53.7
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 1.4e-82 311.6 295 58.6
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 5.4e-82 309.7 643 35.3
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 3.0e-80 303.9 513 37.8
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 2.5e-79 300.8 294 59.2
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 4.9e-75 286.6 426 46.9
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.6e-70 271.6 304 51.6
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 1.2e-68 265.4 297 52.2
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 5.6e-63 246.5 204 64.7
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 2.4e-58 231.1 174 64.4
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 4.2e-58 230.3 380 40.8
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 5.1e-56 223.4 149 74.5
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 6.0e-49 199.9 197 55.3
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.5e-44 185.3 155 60.0
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 1.6e-41 175.3 116 68.1
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 4.2e-34 150.6 240 36.7
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 7.2e-26 123.2 179 49.2
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 3.6e-25 120.9 732 25.1
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 3.6e-17 94.4 94 53.2
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 2.3e-16 91.7 61 75.4
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 7.4e-15 86.7 92 48.9
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 7.0e-13 80.1 99 48.5
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 9.1e-13 79.7 101 46.5
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.0e-12 78.6 55 63.6
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 4.5e-12 77.4 63 60.3
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 1.7e-11 75.5 101 44.6
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.7e-11 75.5 55 65.5
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 1.9e-10 72.0 63 57.1
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 5.5e-10 70.5 164 33.5


User provided reference genes

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