Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 2.6e-164 582.0 298 100.0
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 9.4e-159 563.5 298 96.3
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 1.2e-148 530.0 311 89.4
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.8e-146 522.7 298 89.3
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 7.5e-140 500.7 296 84.5
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.3e-139 500.0 296 84.5
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 3.7e-139 498.4 298 83.9
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 3.7e-139 498.4 298 84.6
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 6.4e-139 497.7 303 82.8
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 1.9e-138 496.1 297 84.5
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 3.2e-138 495.4 293 84.3
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.2e-137 493.4 300 83.0
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.2e-137 493.4 298 82.9
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 2.7e-137 492.3 298 82.2
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 3.5e-137 491.9 298 82.2
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 4.6e-137 491.5 301 82.4
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 7.8e-137 490.7 298 82.2
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 7.8e-137 490.7 298 82.6
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 7.8e-137 490.7 298 82.9
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.3e-136 490.0 298 82.9
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.7e-136 489.6 296 82.8
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 3.0e-136 488.8 300 82.3
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 3.0e-136 488.8 298 82.9
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 5.0e-136 488.0 298 81.5
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 5.0e-136 488.0 298 81.5
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 6.6e-136 487.6 298 81.5
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 6.6e-136 487.6 306 81.4
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 6.6e-136 487.6 298 83.2
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 6.6e-136 487.6 298 81.2
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 6.6e-136 487.6 299 81.3
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 8.6e-136 487.3 280 85.0
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 8.6e-136 487.3 300 82.0
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.9e-135 486.1 289 83.7
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.9e-135 486.1 289 83.7
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.9e-135 486.1 292 83.2
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.9e-135 486.1 289 83.7
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 1.9e-135 486.1 298 81.2
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 2.5e-135 485.7 298 81.5
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 2.5e-135 485.7 290 83.4
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 3.3e-135 485.3 298 81.5
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 4.3e-135 485.0 296 81.8
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 4.3e-135 485.0 298 80.9
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 5.6e-135 484.6 298 80.9
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 7.3e-135 484.2 292 82.9
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 1.2e-134 483.4 307 79.8
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 1.2e-134 483.4 300 82.7
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 2.1e-134 482.6 298 81.5
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.1e-134 482.6 303 80.2
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 2.1e-134 482.6 300 81.0
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.8e-134 482.3 279 84.6
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 3.6e-134 481.9 297 81.8
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 8.1e-134 480.7 293 81.6
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 8.1e-134 480.7 298 80.2
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.1e-133 480.3 298 79.5
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 3.1e-133 478.8 307 78.8
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 4.0e-133 478.4 282 83.3
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 6.8e-133 477.6 282 83.7
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 6.8e-133 477.6 299 80.3
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 8.9e-133 477.2 302 79.8
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.5e-132 476.5 292 80.8
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 1.5e-132 476.5 298 80.2
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 2.0e-132 476.1 293 81.2
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.0e-132 476.1 298 79.5
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 2.6e-132 475.7 300 79.7
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 3.4e-132 475.3 298 79.9
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.3e-131 473.4 276 83.7
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 1.7e-131 473.0 302 79.5
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 4.9e-131 471.5 280 81.4
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.1e-130 470.3 300 78.7
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.1e-130 470.3 293 80.9
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 1.1e-130 470.3 298 80.5
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.1e-130 470.3 302 78.8
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 1.4e-130 469.9 302 78.8
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.4e-130 469.9 281 82.2
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 1.4e-130 469.9 300 79.7
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 2.4e-130 469.2 298 78.9
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.2e-130 468.8 282 81.6
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 5.4e-130 468.0 302 79.8
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.2e-129 466.8 298 79.2
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 1.2e-129 466.8 302 79.1
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 6.0e-129 464.5 298 78.5
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 7.8e-129 464.2 301 78.1
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 7.8e-129 464.2 297 79.1
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 2.3e-128 462.6 300 79.0
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 3.9e-128 461.8 299 79.3
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 5.1e-128 461.5 282 81.2
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 8.6e-128 460.7 310 76.5
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.1e-127 460.3 300 77.3
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.1e-127 460.3 300 77.3
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 2.5e-127 459.1 300 79.3
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 9.5e-127 457.2 298 77.5
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 1.6e-126 456.4 291 79.4
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.1e-126 456.1 282 80.1
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 8.1e-126 454.1 289 79.2
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 1.1e-125 453.8 265 84.2
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 1.4e-125 453.4 295 77.3
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 2.3e-125 452.6 296 78.0
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 3.1e-125 452.2 296 77.7
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 8.9e-125 450.7 298 77.5
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 1.5e-124 449.9 287 78.0
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 9.9e-124 447.2 297 76.8
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.3e-123 446.8 298 75.2
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 6.4e-123 444.5 282 79.1
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 6.4e-123 444.5 298 76.5
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 8.4e-123 444.1 281 78.3
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 8.4e-123 444.1 291 77.3
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 3.2e-122 442.2 300 77.3
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 7.1e-122 441.0 384 63.5
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 9.2e-122 440.7 294 76.5
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.2e-121 440.3 305 75.1
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.7e-121 439.1 270 82.6
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 6.0e-121 438.0 295 75.6
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.3e-120 436.8 281 79.0
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.1e-119 433.7 292 76.0
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 1.5e-119 433.3 294 75.2
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 1.2e-118 430.3 312 70.5
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 1.8e-117 426.4 327 69.1
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 1.2e-116 423.7 299 72.6
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 3.4e-116 422.2 296 73.0
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 5.8e-116 421.4 290 74.5
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 2.2e-115 419.5 268 79.5
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.4e-114 416.8 265 78.9
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 2.7e-113 412.5 262 81.7
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 1.2e-108 397.1 221 87.3
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 2.0e-108 396.4 280 72.9
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 3.4e-108 395.6 262 76.7
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.3e-107 393.7 221 86.9
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 4.6e-105 385.2 250 75.2
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 3.9e-104 382.1 285 67.0
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.4e-103 377.9 218 83.5
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.4e-103 377.9 218 83.5
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.3e-102 377.1 251 73.7
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 2.1e-102 376.3 272 68.0
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.1e-98 364.0 230 80.4
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.6e-97 360.1 305 65.9
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 3.5e-97 359.0 255 69.0
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 6.2e-94 348.2 200 83.5
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.5e-90 336.3 215 79.5
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 5.7e-87 325.1 182 88.5
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.1e-85 320.9 182 85.2
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 1.1e-82 310.8 208 77.4
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 1.3e-78 297.4 174 84.5
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 1.2e-76 290.8 190 76.8
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.8e-72 276.9 221 68.8
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 4.1e-69 265.8 152 86.8
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 8.5e-67 258.1 194 68.0
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.2e-57 227.6 146 76.0
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 1.6e-57 227.3 209 61.7
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 1.7e-46 190.7 116 76.7
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 4.1e-45 186.0 245 46.9
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 4.5e-44 182.6 177 58.8
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 1.9e-42 177.2 158 59.5
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 1.2e-41 174.5 136 66.9
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 1.2e-39 167.9 102 78.4
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 3.8e-35 152.9 86 81.4
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 4.3e-34 149.4 93 76.3
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.1e-29 134.8 92 70.7
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 7.0e-29 132.1 97 72.2
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 9.2e-29 131.7 300 34.0
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 5.6e-26 122.5 66 90.9
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 5.6e-26 122.5 66 90.9
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 4.0e-24 116.3 209 39.7
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 3.2e-21 106.7 170 40.0
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.3e-18 96.7 87 63.2
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.3e-18 96.7 87 63.2
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 3.4e-15 86.7 158 39.2
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 1.7e-14 84.3 79 58.2
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 6.4e-14 82.4 53 69.8
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 8.3e-14 82.0 85 52.9
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 4.6e-12 76.3 92 47.8
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.0e-11 75.1 65 58.5
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.3e-11 74.7 59 62.7
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 1.7e-11 74.3 77 58.4
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 6.6e-11 72.4 103 42.7
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.9e-10 70.9 110 40.9
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 3.1e-08 63.5 57 56.1
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 8.9e-08 62.0 45 73.3
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 5.8e-07 59.3 34 79.4
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.2e-06 57.4 53 56.6


User provided reference genes

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