Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 1.5e-26 122.1 60 100.0
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 8.0e-25 116.3 60 93.3
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 6.4e-22 106.7 60 86.7
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 3.2e-21 104.4 60 83.3
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 6.2e-17 90.1 60 71.7
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 1.8e-16 88.6 60 70.0
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 4.0e-16 87.4 55 70.9
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 4.0e-16 87.4 55 72.7
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 5.2e-16 87.0 58 69.0
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 8.9e-16 86.3 61 65.6
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 1.2e-15 85.9 61 67.2
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 1.2e-15 85.9 61 67.2
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 2.6e-15 84.7 60 66.7
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 3.4e-15 84.3 59 69.5
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 7.5e-15 83.2 55 67.3
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 9.8e-15 82.8 52 69.2
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 1.3e-14 82.4 60 68.3
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 1.3e-14 82.4 53 69.8
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 1.3e-14 82.4 52 73.1
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 1.7e-14 82.0 60 65.0
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 1.7e-14 82.0 61 67.2
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 1.7e-14 82.0 52 69.2
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 2.2e-14 81.6 60 63.3
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 2.9e-14 81.3 60 61.7
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 3.7e-14 80.9 53 66.0
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 3.7e-14 80.9 58 58.6
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 4.9e-14 80.5 52 65.4
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 4.9e-14 80.5 57 64.9
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 4.9e-14 80.5 61 65.6
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 8.3e-14 79.7 60 61.7
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 8.3e-14 79.7 54 63.0
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 1.1e-13 79.3 58 63.8
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 1.1e-13 79.3 60 61.7
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 1.4e-13 79.0 48 77.1
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 1.4e-13 79.0 60 61.7
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 1.4e-13 79.0 55 65.5
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 1.9e-13 78.6 61 62.3
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 2.4e-13 78.2 52 63.5
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 2.4e-13 78.2 61 65.6
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 2.4e-13 78.2 51 64.7
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 2.4e-13 78.2 51 64.7
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 3.2e-13 77.8 55 58.2
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 3.2e-13 77.8 60 60.0
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 4.1e-13 77.4 52 67.3
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 4.1e-13 77.4 51 70.6
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 5.4e-13 77.0 60 60.0
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 5.4e-13 77.0 54 66.7
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 5.4e-13 77.0 54 66.7
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 5.4e-13 77.0 54 66.7
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 5.4e-13 77.0 54 66.7
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 7.1e-13 76.6 60 60.0
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 7.1e-13 76.6 60 56.7
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 1.2e-12 75.9 52 65.4
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 1.2e-12 75.9 61 60.7
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 1.2e-12 75.9 61 60.7
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 1.2e-12 75.9 61 60.7
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 1.6e-12 75.5 52 65.4
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 1.6e-12 75.5 52 65.4
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 1.6e-12 75.5 54 63.0
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 2.1e-12 75.1 60 55.0
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 3.5e-12 74.3 55 60.0
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 6.0e-12 73.6 51 64.7
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 6.0e-12 73.6 51 58.8
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 6.0e-12 73.6 51 62.7
Aqoxy7G03752 Aquilegia oxysepala HOM05D007573 ORTHO05D009938 1.0e-11 72.8 52 67.3
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 1.0e-11 72.8 51 64.7
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 1.0e-11 72.8 51 64.7
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 1.3e-11 72.4 60 58.3
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 1.3e-11 72.4 51 56.9
PSO017G6785 Papaver somniferum HOM05D007573 ORTHO05D009938 3.0e-11 71.2 49 59.2
EL10Ac3g05359 Beta vulgaris HOM05D007573 ORTHO05D009938 6.6e-11 70.1 52 61.5
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 8.6e-11 69.7 62 58.1
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 1.1e-10 69.3 49 65.3
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 1.6e-09 65.5 42 69.0
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 1.6e-09 65.5 64 57.8
Lsat_1_v5_gn_7_105220 Lactuca sativa HOM05D007573 ORTHO05D009938 2.8e-09 64.7 40 70.0
MBI15_g18737_MAGBIO Magnolia biondii HOM05D007573 ORTHO05D009938 1.4e-08 62.4 48 52.1
Migut.M00851 Erythranthe guttata HOM05D007573 ORTHO05D009938 2.3e-08 61.6 54 51.9
Actinidia09676 Actinidia chinensis HOM05D007573 ORTHO05D009938 2.0e-07 58.5 46 50.0
SHI14860 Sapria himalayana HOM05D007573 ORTHO05D009938 1.3e-06 55.8 51 43.1
SEGI_00037 Sequoiadendron giganteum HOM05D007573 ORTHO05D009938 4.9e-06 53.9 53 43.4
MD03G1224700 Malus domestica HOM05D007573 ORTHO05D009938 8.4e-06 53.1 39 56.4


User provided reference genes

Program Settings