Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G005890 Cucumis sativus L. HOM05D000169 ORTHO05D004780 2.5e-90 335.5 175 100.0
MELO3C016565.2 Cucumis melo HOM05D000169 ORTHO05D004780 3.7e-86 321.6 170 98.2
ClCG10G006410 Citrullus lanatus HOM05D000169 ORTHO05D004780 7.7e-84 313.9 170 94.7
Sed0000326 Sechium edule HOM05D000169 ORTHO05D004780 2.7e-73 278.9 170 87.1
Cfa002101 Carpinus fangiana HOM05D000169 ORTHO05D004780 1.8e-53 213.0 186 60.8
Haze_16349 Corylus avellana HOM05D000169 ORTHO05D004780 2.2e-51 206.1 186 60.2
CiPaw.02G148300 Carya illinoinensis HOM05D000169 ORTHO05D004780 6.1e-49 198.0 189 56.1
GSVIVG01017056001 Vitis vinifera HOM05D000169 ORTHO05D004780 1.0e-48 197.2 177 61.0
Hma1.2p1_1195F.1_g265900 Hydrangea macrophylla HOM05D000169 ORTHO05D004780 1.2e-47 193.7 176 61.9
COL.COLO4_30442 Corchorus olitorius HOM05D000169 ORTHO05D004780 2.0e-47 193.0 161 62.7
Oeu033511.1 Olea europaea HOM05D000169 ORTHO05D004780 2.0e-47 193.0 169 61.5
QL05p021511 Quercus lobata HOM05D000169 ORTHO05D004780 5.7e-47 191.4 189 55.6
Thecc.06G093200 Theobroma cacao HOM05D000169 ORTHO05D004780 1.7e-46 189.9 158 63.3
CANSAT56G0566 Cannabis sativa HOM05D000169 ORTHO05D004780 6.3e-46 188.0 175 60.6
Eucgr.J02955 Eucalyptus grandis HOM05D000169 ORTHO05D004780 8.3e-46 187.6 140 72.1
CiPaw.01G235100 Carya illinoinensis HOM05D000169 ORTHO05D004780 1.1e-45 187.2 189 55.6
Ca_20416_v3 Cicer arietinum L. HOM05D000169 ORTHO05D004780 1.4e-45 186.8 173 60.1
Actinidia21686 Actinidia chinensis HOM05D000169 ORTHO05D004780 2.4e-45 186.0 172 59.9
Prupe.3G065200 Prunus persica HOM05D000169 ORTHO05D004780 5.4e-45 184.9 180 58.9
PGSC0003DMG400026465 Solanum tuberosum HOM05D000169 ORTHO05D004780 1.2e-44 183.7 159 61.0
Nitab4.5_0002859g0130 Nicotiana tabacum HOM05D000169 ORTHO05D004780 1.6e-44 183.3 156 60.9
vmacro18881 Vaccinium macrocarpon HOM05D000169 ORTHO05D004780 1.6e-44 183.3 157 64.3
CSS0039624 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D004780 2.0e-44 183.0 157 63.7
Manes.11G037400 Manihot esculenta HOM05D000169 ORTHO05D004780 2.7e-44 182.6 165 60.0
Medtr4g011790 Medicago truncatula HOM05D000169 ORTHO05D004780 2.7e-44 182.6 171 60.2
Nitab4.5_0001968g0110 Nicotiana tabacum HOM05D000169 ORTHO05D004780 3.5e-44 182.2 159 59.7
Potri.001G185500 Populus trichocarpa HOM05D000169 ORTHO05D004780 3.5e-44 182.2 164 61.0
Peaxi162Scf00034g00413 Petunia axillaris HOM05D000169 ORTHO05D004780 5.9e-44 181.4 159 59.7
Psat7g253800 Pisum sativum HOM05D000169 ORTHO05D004780 1.0e-43 180.6 171 57.9
Solyc12g044290.2 Solanum lycopersicum HOM05D000169 ORTHO05D004780 1.7e-43 179.9 159 59.1
Sabra01G0154600 Salix brachista HOM05D000169 ORTHO05D004780 2.3e-43 179.5 164 60.4
Duzib160G0343 Durio zibethinus HOM05D000169 ORTHO05D004780 3.8e-43 178.7 161 60.2
arahy.Tifrunner.gnm1.ann1.5X7XAP Arachis hypogaea HOM05D000169 ORTHO05D004780 8.6e-43 177.6 166 60.2
Cc04_g02960 Coffea canephora HOM05D000169 ORTHO05D004780 1.1e-42 177.2 179 57.0
FvH4_6g31860 Fragaria vesca HOM05D000169 ORTHO05D004780 1.1e-42 177.2 171 56.1
FAN14G0873 Fragaria x ananassa HOM05D000169 ORTHO05D004780 1.1e-42 177.2 171 56.1
RcHm_v2.0_Chr2g0139171 Rosa chinensis HOM05D000169 ORTHO05D004780 1.1e-42 177.2 180 57.2
TWI12G1479 Tripterygium wilfordii HOM05D000169 ORTHO05D004780 1.1e-42 177.2 166 59.0
DCAR_026335 Daucus carota HOM05D000169 ORTHO05D004780 2.5e-42 176.0 175 57.7
Migut.I00934 Erythranthe guttata HOM05D000169 ORTHO05D004780 2.5e-42 176.0 157 59.9
Lalb_Chr25g0280011 Lupinus albus HOM05D000169 ORTHO05D004780 2.5e-42 176.0 154 64.9
SGA_v2.0_scaffold5G02549 Striga asiatica HOM05D000169 ORTHO05D004780 2.5e-42 176.0 169 56.8
TAR624G1376 Trochodendron aralioides HOM05D000169 ORTHO05D004780 2.5e-42 176.0 164 57.3
TAR636G0874 Trochodendron aralioides HOM05D000169 ORTHO05D004780 2.5e-42 176.0 192 51.6
SalBow2G1665 Salvia bowleyana HOM05D000169 ORTHO05D004780 3.3e-42 175.6 153 58.8
Atru.chr1.3409_Atru.chr1.3410 Acer truncatum HOM05D000169 ORTHO05D004780 4.2e-42 175.3 148 62.8
arahy.Tifrunner.gnm1.ann1.4P55VP Arachis hypogaea HOM05D000169 ORTHO05D004780 4.2e-42 175.3 166 59.6
Nn2g11670 Nelumbo nucifera HOM05D000169 ORTHO05D004780 5.6e-42 174.9 172 56.4
Sc15g0002130 Simmondsia chinensis HOM05D000169 ORTHO05D004780 5.6e-42 174.9 157 59.2
Ciclev10025185m.g Citrus clementina HOM05D000169 ORTHO05D004780 9.5e-42 174.1 165 59.4
Nitab4.5_0001315g0060 Nicotiana tabacum HOM05D000169 ORTHO05D004780 9.5e-42 174.1 141 62.4
Nitab4.5_0011683g0010 Nicotiana tabacum HOM05D000169 ORTHO05D004780 9.5e-42 174.1 141 62.4
TPR.G27504 Trifolium pratense HOM05D000169 ORTHO05D004780 1.2e-41 173.7 171 57.3
FAN05G1415 Fragaria x ananassa HOM05D000169 ORTHO05D004780 1.6e-41 173.3 171 55.6
Glyma.07G019100 Glycine max HOM05D000169 ORTHO05D004780 2.1e-41 172.9 162 61.1
TPR.G38605 Trifolium pratense HOM05D000169 ORTHO05D004780 2.1e-41 172.9 162 59.9
TPR.G5245 Trifolium pratense HOM05D000169 ORTHO05D004780 4.7e-41 171.8 170 56.5
EL10Ac9g22056 Beta vulgaris HOM05D000169 ORTHO05D004780 6.1e-41 171.4 166 57.2
Gohir.A10G081900 Gossypium hirsutum HOM05D000169 ORTHO05D004780 8.0e-41 171.0 161 57.8
Oeu000461.2 Olea europaea HOM05D000169 ORTHO05D004780 8.0e-41 171.0 162 58.6
Psat7g253640 Pisum sativum HOM05D000169 ORTHO05D004780 8.0e-41 171.0 162 58.6
TWI75G0003 Tripterygium wilfordii HOM05D000169 ORTHO05D004780 8.0e-41 171.0 166 57.2
Gohir.D10G069600 Gossypium hirsutum HOM05D000169 ORTHO05D004780 1.0e-40 170.6 161 58.4
Gorai.011G073700 Gossypium raimondii HOM05D000169 ORTHO05D004780 1.0e-40 170.6 161 58.4
MD17G1190300 Malus domestica HOM05D000169 ORTHO05D004780 1.8e-40 169.9 171 53.8
Psat3g156160 Pisum sativum HOM05D000169 ORTHO05D004780 1.8e-40 169.9 171 55.0
HanXRQChr16g0500801 Helianthus annuus HOM05D000169 ORTHO05D004780 2.3e-40 169.5 141 63.8
CAN.G438.32 Capsicum annuum HOM05D000169 ORTHO05D004780 3.0e-40 169.1 158 55.7
Glyma.08G204300 Glycine max HOM05D000169 ORTHO05D004780 3.0e-40 169.1 150 62.7
Medtr4g013210 Medicago truncatula HOM05D000169 ORTHO05D004780 8.9e-40 167.5 155 58.7
MSTRG.11049 Avicennia marina HOM05D000169 ORTHO05D004780 1.5e-39 166.8 152 57.9
Ca_20370_v3 Cicer arietinum L. HOM05D000169 ORTHO05D004780 2.0e-39 166.4 171 54.4
Phvul.010G148300 Phaseolus vulgaris HOM05D000169 ORTHO05D004780 2.6e-39 166.0 169 56.2
VMungo0331G1448 Vigna mungo HOM05D000169 ORTHO05D004780 3.4e-39 165.6 170 54.7
Aa31LG8G3300 Aethionema arabicum HOM05D000169 ORTHO05D004780 4.4e-39 165.2 165 57.0
Aqoxy7G01575 Aquilegia oxysepala HOM05D000169 ORTHO05D004780 5.7e-39 164.9 178 51.7
THA.LOC104817978 Tarenaya hassleriana HOM05D000169 ORTHO05D004780 7.5e-39 164.5 156 57.7
ATR0315G057 Amborella trichopoda HOM05D000169 ORTHO05D004780 9.8e-39 164.1 158 54.4
Carub.0003s1591 Capsella rubella HOM05D000169 ORTHO05D004780 9.8e-39 164.1 155 58.7
CARHR091330 Cardamine hirsuta HOM05D000169 ORTHO05D004780 2.2e-38 162.9 149 61.7
Ah.01g021720 Amaranthus hybridus HOM05D000169 ORTHO05D004780 2.9e-38 162.5 173 53.2
AL3G28850 Arabidopsis lyrata HOM05D000169 ORTHO05D004780 2.9e-38 162.5 155 57.4
ECA232G3766 Erigeron canadensis HOM05D000169 ORTHO05D004780 2.9e-38 162.5 141 63.1
Lj5A57T75 Lonicera japonica HOM05D000169 ORTHO05D004780 2.9e-38 162.5 121 70.2
MBI01_g30862_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D004780 2.9e-38 162.5 173 53.2
A01p37930 Brassica napus HOM05D000169 ORTHO05D004780 4.9e-38 161.8 165 53.9
Lj3g0027736 Lotus japonicus HOM05D000169 ORTHO05D004780 6.4e-38 161.4 155 58.1
MD09G1208800 Malus domestica HOM05D000169 ORTHO05D004780 6.4e-38 161.4 209 45.0
Sp3g14530 Schrenkiella parvula HOM05D000169 ORTHO05D004780 8.3e-38 161.0 155 57.4
AT3G16170 Arabidopsis thaliana HOM05D000169 ORTHO05D004780 1.8e-37 159.8 150 59.3
Thhalv10020466m.g Eutrema salsugineum HOM05D000169 ORTHO05D004780 5.4e-37 158.3 155 57.4
AUR62011680 Chenopodium quinoa HOM05D000169 ORTHO05D004780 1.6e-36 156.8 173 51.4
AUR62016505 Chenopodium quinoa HOM05D000169 ORTHO05D004780 1.6e-36 156.8 173 52.6
Hund06638 Selenicereus undatus HOM05D000169 ORTHO05D004780 1.6e-36 156.8 164 55.5
A05p33330 Brassica napus HOM05D000169 ORTHO05D004780 2.0e-36 156.4 155 55.5
Lsat_1_v5_gn_4_103101 Lactuca sativa HOM05D000169 ORTHO05D004780 2.0e-36 156.4 142 61.3
PSO566G0043 Papaver somniferum HOM05D000169 ORTHO05D004780 2.7e-36 156.0 166 50.0
BcaB06g25712 Brassica carinata HOM05D000169 ORTHO05D004780 4.6e-36 155.2 167 52.1
BolC5t33782H Brassica oleracea HOM05D000169 ORTHO05D004780 5.9e-36 154.8 178 50.6
BolC1t04779H Brassica oleracea HOM05D000169 ORTHO05D004780 1.3e-35 153.7 162 54.3
Zm00001eb152410 Zea mays HOM05D000169 ORTHO05D004780 1.7e-35 153.3 162 50.0
C05p50330 Brassica napus HOM05D000169 ORTHO05D004780 2.3e-35 152.9 155 54.2
BraA01t03853Z Brassica rapa HOM05D000169 ORTHO05D004780 2.9e-35 152.5 165 52.1
BraA05t22158Z Brassica rapa HOM05D000169 ORTHO05D004780 8.6e-35 151.0 155 54.2
unitig_748.g7432 Utricularia gibba HOM05D000169 ORTHO05D004780 8.6e-35 151.0 150 58.0
PSO782G1073 Papaver somniferum HOM05D000169 ORTHO05D004780 1.9e-34 149.8 166 48.8
CDE05G2910 Ceratophyllum demersum HOM05D000169 ORTHO05D004780 1.6e-33 146.7 157 49.7
HPP92_024579 Vanilla planifolia HOM05D000169 ORTHO05D004780 1.0e-32 144.1 148 51.4
Cpa.g.sc296.4 Carica papaya HOM05D000169 ORTHO05D004780 4.0e-32 142.1 122 65.6
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 5.8e-31 138.3 108 69.4
Cpa.g.c28291.1 Carica papaya HOM05D000169 ORTHO05D004780 9.8e-31 137.5 97 73.2
CAN.G144.5 Capsicum annuum HOM05D000169 ORTHO05D004780 4.9e-30 135.2 101 65.3
Psat2g140320 Pisum sativum HOM05D005005 ORTHO05D004780 1.3e-27 127.1 120 57.5
SMO203G0257 Selaginella moellendorffii HOM05D000169 ORTHO05D004780 3.9e-27 125.6 142 45.1
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 1.1e-26 124.0 120 56.7
SHI18051 Sapria himalayana HOM05D000169 ORTHO05D004780 1.5e-26 123.6 132 53.0
Peaxi162Scf00015g00126 Petunia axillaris HOM05D000169 ORTHO05D004780 2.0e-23 113.2 82 69.5
Mapoly0036s0029 Marchantia polymorpha HOM05D000169 ORTHO05D004780 3.4e-23 112.5 167 38.9
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 1.3e-22 110.5 128 47.7
Nitab4.5_0003054g0020 Nicotiana tabacum HOM05D000169 ORTHO05D004780 2.9e-22 109.4 135 45.9
C01p48140 Brassica napus HOM05D000169 ORTHO05D004780 1.4e-21 107.1 166 43.4
SEGI_23005 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 1.2e-20 104.0 181 35.9
Mapoly0003s0295 Marchantia polymorpha HOM05D000169 ORTHO05D004780 2.7e-20 102.8 168 37.5
Psat1g148040 Pisum sativum HOM05D005005 ORTHO05D006178 2.7e-20 102.8 62 77.4
Psat2g140280 Pisum sativum HOM05D005005 ORTHO05D006178 3.0e-19 99.4 62 77.4
Pp3c19_10110 Physcomitrium patens HOM05D000169 ORTHO05D004780 1.1e-18 97.4 175 37.1
BcaB07g30448 Brassica carinata HOM05D000169 ORTHO05D004780 1.5e-18 97.1 82 62.2
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 1.5e-18 97.1 62 74.2
SEGI_02233 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 1.9e-18 96.7 160 35.6
Pp3c1_9430 Physcomitrium patens HOM05D000169 ORTHO05D004780 3.3e-18 95.9 105 43.8
BcaB07g30450 Brassica carinata HOM05D000169 ORTHO05D004780 2.3e-16 89.7 78 61.5
Lsat_1_v5_gn_3_30240 Lactuca sativa HOM05D000169 ORTHO05D004780 7.1e-13 78.2 50 74.0
BcaB07g30452 Brassica carinata HOM05D000169 ORTHO05D004780 1.2e-12 77.4 81 54.3
ATR0315G109 Amborella trichopoda HOM05D000169 ORTHO05D004780 2.7e-12 76.3 91 46.2
ATR0315G090 Amborella trichopoda HOM05D000169 ORTHO05D004780 1.0e-11 74.3 91 45.1
CBR_g3023 Chara braunii HOM05D000169 ORTHO05D004780 5.1e-11 72.0 79 43.0
CBR_g41790 Chara braunii HOM05D002985 ORTHO05D003335 5.1e-11 72.0 79 43.0
PRCOL_00000351 Prasinoderma coloniale HOM05D000169 ORTHO05D004780 8.6e-11 71.2 104 37.5
Psat2g015720 Pisum sativum HOM05D000169 ORTHO05D004780 3.6e-09 65.9 70 52.9
SEGI_14736 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 2.4e-08 63.2 48 58.3
Psat0s3793g0040 Pisum sativum HOM05D001826 ORTHO05D007448 8.9e-08 61.2 63 55.6
Psat7g158200 Pisum sativum HOM05D005005 ORTHO05D006178 1.5e-07 60.5 73 47.9
Cre13.g586000 Chlamydomonas reinhardtii HOM05D000169 ORTHO05D004780 4.4e-07 58.9 119 31.1
Dinv30473 Davidia involucrata HOM05D000169 ORTHO05D004780 5.8e-07 58.5 66 53.0


User provided reference genes

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