Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 2.2e-31 138.3 66 100.0
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 3.2e-27 124.4 66 90.9
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 3.2e-27 124.4 66 90.9
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 6.6e-20 100.1 66 75.8
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 2.7e-13 78.2 53 69.8
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 2.3e-12 75.1 55 65.5
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 2.3e-12 75.1 47 76.6
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 2.3e-12 75.1 47 76.6
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 2.3e-12 75.1 59 64.4
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 3.9e-12 74.3 54 68.5
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 3.9e-12 74.3 56 62.5
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 3.9e-12 74.3 57 64.9
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 5.0e-12 73.9 59 62.7
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 6.6e-12 73.6 53 67.9
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 6.6e-12 73.6 54 66.7
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 6.6e-12 73.6 54 66.7
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.5e-11 72.4 47 70.2
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.5e-11 72.4 47 70.2
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 1.9e-11 72.0 44 77.3
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 1.9e-11 72.0 52 65.4
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 1.9e-11 72.0 54 64.8
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 3.3e-11 71.2 44 75.0
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 7.3e-11 70.1 52 63.5
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 7.3e-11 70.1 53 66.0
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 9.5e-11 69.7 60 56.7
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 1.2e-10 69.3 59 57.6
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 1.2e-10 69.3 54 63.0
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 1.6e-10 68.9 49 67.3
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 2.1e-10 68.6 59 59.3
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 2.8e-10 68.2 46 67.4
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 2.8e-10 68.2 54 63.0
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 2.8e-10 68.2 46 69.6
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 4.7e-10 67.4 59 55.9
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 4.7e-10 67.4 59 55.9
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 4.7e-10 67.4 44 68.2
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 6.1e-10 67.0 44 72.7
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 1.0e-09 66.2 47 66.0
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 1.4e-09 65.9 63 52.4
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 1.8e-09 65.5 47 63.8
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 2.3e-09 65.1 47 63.8
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 2.3e-09 65.1 47 63.8
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 2.3e-09 65.1 47 61.7
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 2.3e-09 65.1 56 57.1
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 2.3e-09 65.1 56 55.4
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 2.3e-09 65.1 56 55.4
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 3.1e-09 64.7 51 58.8
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 5.2e-09 63.9 46 60.9
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 2.6e-08 61.6 47 61.7
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 3.4e-08 61.2 38 71.1
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 4.4e-08 60.8 40 60.0
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 4.4e-08 60.8 37 73.0
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 7.5e-08 60.1 40 70.0
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 9.8e-08 59.7 45 60.0
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 9.8e-08 59.7 51 52.9
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 2.9e-07 58.2 38 68.4
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 3.7e-07 57.8 45 55.6
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 6.4e-07 57.0 62 53.2
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 1.1e-06 56.2 38 65.8
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 3.2e-06 54.7 44 59.1
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 9.2e-06 53.1 46 52.2


User provided reference genes

Program Settings