Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 2.8e-191 671.8 344 100.0
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 4.3e-179 631.3 343 95.3
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 4.3e-163 578.2 346 86.7
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 2.4e-113 412.9 346 65.9
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 5.3e-113 411.8 350 65.4
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 9.0e-113 411.0 348 64.4
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 1.2e-112 410.6 346 65.6
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 7.7e-112 407.9 343 64.7
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 2.2e-111 406.4 345 64.3
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 3.8e-111 405.6 348 64.1
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 5.0e-111 405.2 342 64.3
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 1.0e-108 397.5 346 63.3
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 5.1e-108 395.2 346 61.8
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 6.7e-108 394.8 346 61.8
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 8.8e-108 394.4 346 63.0
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 5.7e-107 391.7 352 61.9
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 8.2e-106 387.9 310 66.5
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 5.3e-105 385.2 346 60.7
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 2.0e-104 383.3 346 61.3
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 2.6e-104 382.9 302 67.9
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 5.9e-104 381.7 349 60.5
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 1.7e-103 380.2 345 59.1
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 1.4e-102 377.1 344 60.2
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 2.5e-102 376.3 337 60.8
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 2.5e-102 376.3 306 64.1
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 9.4e-102 374.4 338 60.9
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 9.4e-102 374.4 346 59.5
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 2.7e-101 372.9 339 59.9
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 2.7e-101 372.9 339 59.9
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 6.1e-101 371.7 340 60.3
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 7.9e-101 371.3 346 59.2
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 1.4e-100 370.5 310 61.9
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 5.1e-100 368.6 308 64.3
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 8.8e-100 367.9 308 64.6
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 2.0e-99 366.7 338 58.9
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 2.0e-99 366.7 311 61.7
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 2.6e-99 366.3 355 58.6
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 2.6e-99 366.3 349 59.3
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 4.4e-99 365.5 348 60.1
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 2.2e-98 363.2 312 62.8
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 2.8e-98 362.8 309 63.4
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 2.8e-98 362.8 312 61.5
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 3.7e-98 362.5 290 65.5
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 4.8e-98 362.1 308 63.6
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 1.1e-97 360.9 312 61.5
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 1.6e-96 357.1 312 60.6
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 2.0e-96 356.7 278 64.7
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 7.7e-96 354.8 312 59.9
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 1.3e-95 354.0 340 58.5
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 2.9e-95 352.8 346 57.8
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 1.5e-94 350.5 353 56.4
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 2.5e-94 349.7 347 58.2
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 3.2e-94 349.4 279 65.9
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 3.2e-94 349.4 337 59.9
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 4.2e-94 349.0 344 58.1
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 9.4e-94 347.8 347 56.2
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 2.1e-93 346.7 283 64.7
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 4.7e-93 345.5 274 65.3
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 6.1e-93 345.1 299 59.2
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 6.1e-93 345.1 346 57.5
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 2.3e-92 343.2 355 54.4
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 2.3e-92 343.2 346 56.9
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 4.0e-92 342.4 291 61.5
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 5.7e-91 338.6 345 55.9
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 4.8e-90 335.5 311 57.6
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 6.3e-90 335.1 348 55.7
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 6.3e-90 335.1 346 55.2
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 4.1e-89 332.4 278 60.4
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 3.8e-87 325.9 276 59.4
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 6.1e-85 318.5 294 57.8
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 1.8e-84 317.0 320 56.2
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 4.0e-84 315.8 308 55.5
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 1.5e-83 313.9 336 54.8
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 1.3e-82 310.8 327 54.1
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 1.7e-82 310.5 308 54.9
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 6.3e-82 308.5 346 52.9
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 1.1e-81 307.8 353 52.1
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 1.8e-81 307.0 319 54.2
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 2.4e-81 306.6 309 53.4
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 3.1e-81 306.2 355 51.8
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 5.4e-81 305.4 348 52.3
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 9.1e-81 304.7 344 51.7
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 1.2e-80 304.3 351 53.3
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 4.5e-80 302.4 320 54.7
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 4.5e-80 302.4 320 54.7
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 6.3e-74 282.0 337 50.1
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 2.5e-70 270.0 205 67.8
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 9.5e-70 268.1 327 47.4
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 8.9e-68 261.5 327 50.5
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 3.1e-60 236.5 333 42.0
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 4.4e-59 232.6 341 43.4
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 2.3e-55 220.3 184 60.3
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 5.6e-54 215.7 133 77.4
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 1.1e-52 211.5 268 40.3
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 5.6e-46 189.1 205 53.2
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 7.1e-41 172.2 118 67.8
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 5.6e-30 136.0 264 31.4
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 4.0e-28 129.8 114 57.0
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 1.2e-27 128.3 259 36.3
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 1.1e-25 121.7 290 30.7
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 1.2e-24 118.2 134 47.8
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 1.6e-24 117.9 234 38.9
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 5.8e-19 99.4 257 28.4
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 7.6e-19 99.0 124 44.4
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 2.1e-13 80.9 106 44.3
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 1.3e-10 71.6 288 25.3


User provided reference genes

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