Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 2.2e-140 502.3 251 100.0
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.2e-138 496.5 251 98.4
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.2e-135 486.5 251 96.4
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 1.3e-129 466.5 251 90.4
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 1.3e-129 466.5 251 90.4
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 1.3e-129 466.5 251 89.6
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 1.3e-129 466.5 251 90.4
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 7.3e-128 460.7 249 89.6
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.2e-127 459.9 250 90.0
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 1.6e-127 459.5 251 88.4
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 1.6e-127 459.5 250 89.6
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 6.1e-127 457.6 251 88.0
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 6.1e-127 457.6 251 88.8
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 1.8e-126 456.1 251 87.3
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 2.3e-126 455.7 250 89.2
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 2.3e-126 455.7 249 89.2
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 2.3e-126 455.7 251 88.4
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 8.9e-126 453.8 251 88.4
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 1.2e-125 453.4 245 89.4
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.5e-125 453.0 251 88.0
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 3.4e-125 451.8 246 89.0
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 4.4e-125 451.4 251 87.3
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 5.8e-125 451.1 251 86.9
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 7.5e-125 450.7 251 86.1
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 9.8e-125 450.3 250 88.0
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.2e-124 449.1 244 89.3
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 2.2e-124 449.1 251 86.5
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.2e-124 449.1 251 85.7
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 3.7e-124 448.4 251 85.7
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 4.9e-124 448.0 249 86.3
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 6.4e-124 447.6 251 86.1
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 1.1e-123 446.8 249 86.7
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.1e-123 446.8 249 86.3
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 1.4e-123 446.4 249 86.3
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.9e-123 446.0 244 88.9
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 2.4e-123 445.7 249 86.3
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 2.4e-123 445.7 244 89.3
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 2.4e-123 445.7 244 89.3
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 2.4e-123 445.7 250 85.2
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 4.1e-123 444.9 244 89.3
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 5.4e-123 444.5 250 86.4
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 7.0e-123 444.1 244 88.9
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 7.0e-123 444.1 249 86.3
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 9.2e-123 443.7 244 88.9
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 9.2e-123 443.7 249 86.3
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 9.2e-123 443.7 249 88.0
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.2e-122 443.4 259 83.4
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.2e-122 443.4 244 88.9
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 6.0e-122 441.0 249 85.9
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 6.0e-122 441.0 249 84.7
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 7.8e-122 440.7 250 84.8
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.0e-121 440.3 244 87.7
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 1.0e-121 440.3 249 84.3
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 1.3e-121 439.9 249 84.3
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 1.5e-120 436.4 251 82.9
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 3.3e-120 435.3 249 83.1
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 3.3e-120 435.3 244 87.3
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 4.3e-120 434.9 249 83.5
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 4.3e-120 434.9 251 82.9
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 4.3e-120 434.9 244 86.9
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 7.3e-120 434.1 251 82.5
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 7.3e-120 434.1 245 86.5
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 7.3e-120 434.1 296 75.7
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 3.6e-119 431.8 251 81.7
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 1.1e-118 430.3 244 87.7
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.1e-118 430.3 246 85.4
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.4e-118 429.9 251 81.7
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.4e-118 429.9 230 88.7
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 1.4e-118 429.9 245 85.7
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.8e-118 429.5 264 81.1
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 4.0e-118 428.3 250 82.8
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.5e-117 426.4 256 81.2
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.5e-117 426.4 251 81.3
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 2.6e-117 425.6 251 81.3
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 2.6e-117 425.6 251 81.3
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 2.6e-117 425.6 251 81.3
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.6e-117 425.6 251 81.3
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 2.6e-117 425.6 251 82.1
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 3.4e-117 425.2 246 85.4
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 4.4e-117 424.9 251 80.9
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 5.8e-117 424.5 243 85.6
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 1.3e-116 423.3 272 78.7
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 1.7e-116 422.9 251 80.9
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 1.7e-116 422.9 251 80.9
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 3.7e-116 421.8 233 88.4
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 5.4e-115 417.9 251 80.1
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.6e-114 416.4 298 70.1
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 1.6e-114 416.4 251 80.1
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 3.9e-113 411.8 233 83.7
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 4.0e-110 401.7 249 78.3
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 6.4e-108 394.4 250 76.0
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 2.4e-107 392.5 355 59.7
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.2e-106 390.2 245 73.9
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.6e-106 389.8 250 74.8
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 8.6e-105 384.0 254 77.2
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 3.6e-103 378.6 243 75.7
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 2.4e-102 375.9 250 70.4
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 4.4e-101 371.7 223 78.5
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 2.9e-100 369.0 250 72.0
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.4e-99 366.7 212 84.4
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.2e-98 363.6 244 75.0
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.1e-94 350.5 249 70.7
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 9.0e-94 347.4 238 71.8
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 3.5e-90 335.5 250 69.2
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 6.0e-90 334.7 181 87.3
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 7.9e-90 334.3 194 84.5
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 3.0e-89 332.4 250 64.0
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 5.1e-89 331.6 206 80.1
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.3e-81 307.0 323 52.9
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 9.6e-80 300.8 151 99.3
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 9.6e-80 300.8 187 79.1
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 4.3e-72 275.4 208 67.3
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 1.6e-71 273.5 245 53.5
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 2.1e-71 273.1 185 70.8
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 3.2e-67 259.2 211 67.3
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 7.4e-64 248.1 254 48.4
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 6.3e-63 245.0 152 77.0
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 1.4e-59 233.8 194 61.3
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 3.0e-57 226.1 244 54.1
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.4e-54 216.5 120 86.7
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 9.4e-51 204.5 101 99.0
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 3.7e-47 192.6 108 83.3
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 7.0e-46 188.3 99 91.9
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 1.3e-44 184.1 101 84.2
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 6.5e-44 181.8 249 43.8
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.1e-40 171.0 253 36.8
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 4.1e-38 162.5 157 59.2
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 2.0e-37 160.2 100 73.0
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 1.0e-36 157.9 93 79.6
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 6.3e-31 138.7 124 62.1
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 4.7e-18 95.9 100 50.0
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 8.0e-18 95.1 68 61.8
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 2.2e-15 87.0 137 43.1
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 3.2e-14 83.2 56 73.2
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 9.2e-14 81.6 44 79.5
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 4.6e-13 79.3 54 72.2
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 1.2e-08 64.7 30 90.0
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 1.1e-06 58.2 56 60.7


User provided reference genes

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