Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 8.8e-173 610.1 299 100.0
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 2.1e-166 589.0 299 96.3
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 5.0e-160 567.8 299 92.0
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 5.8e-132 474.6 297 73.4
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.9e-131 472.2 297 75.1
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 5.4e-130 468.0 297 74.4
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 8.7e-128 460.7 297 73.7
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 1.9e-127 459.5 297 74.4
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 4.3e-127 458.4 292 74.0
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.1e-126 456.1 297 73.4
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 3.6e-126 455.3 298 71.8
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.8e-125 453.0 301 71.4
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 1.8e-125 453.0 298 73.5
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 3.1e-125 452.2 297 71.7
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 2.6e-124 449.1 316 68.0
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 5.8e-124 448.0 299 70.2
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.7e-123 446.4 298 70.8
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 2.9e-123 445.7 297 71.7
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 4.2e-122 441.8 299 70.6
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 2.1e-121 439.5 292 71.6
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 3.0e-120 435.6 344 63.4
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.2e-116 423.7 297 66.7
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 5.8e-116 421.4 296 67.2
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 3.8e-115 418.7 261 76.2
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 6.4e-115 417.9 298 68.5
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 1.6e-113 413.3 299 65.9
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 3.5e-113 412.1 306 67.0
Haze_09670 Corylus avellana HOM05D008272 ORTHO05D010429 6.7e-112 407.9 297 67.0
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 9.6e-111 404.1 267 71.5
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 3.1e-109 399.1 346 59.5
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 1.5e-108 396.7 292 65.4
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 2.9e-107 392.5 287 64.1
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.2e-105 387.1 238 75.6
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 3.9e-104 382.1 248 71.0
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 1.5e-103 380.2 297 64.0
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 1.9e-103 379.8 293 62.8
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 3.1e-101 372.5 218 77.1
PGR031G2232 Punica granatum HOM05D008272 ORTHO05D010429 7.6e-100 367.9 302 61.3
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 1.0e-99 367.5 249 72.3
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 8.4e-99 364.4 250 66.8
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 3.0e-96 355.9 213 77.5
MBI02_g22115_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 1.5e-95 353.6 295 58.3
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 4.8e-94 348.6 228 71.1
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 3.9e-88 328.9 190 80.5
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 4.8e-86 322.0 190 77.9
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 1.1e-85 320.9 226 69.5
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 3.9e-72 275.8 246 59.3
MBI16_g12297_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 1.1e-69 267.7 190 66.3
Sc03g0008620 Simmondsia chinensis HOM05D008272 ORTHO05D010429 3.1e-69 266.2 182 69.8
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 5.9e-68 261.9 297 49.8
CAN.G337.128 Capsicum annuum HOM05D008272 ORTHO05D010429 6.7e-64 248.4 298 47.3
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 4.5e-60 235.7 147 72.8
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 1.0e-56 224.6 174 62.1
MD11G1219100 Malus domestica HOM05D008272 ORTHO05D010429 3.8e-51 206.1 296 39.9
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 2.1e-49 200.3 126 71.4
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 1.7e-46 190.7 116 75.9
Oeu020117.1 Olea europaea HOM05D008272 ORTHO05D010429 5.8e-23 112.5 114 55.3
Cfa020968 Carpinus fangiana HOM05D008272 ORTHO05D010429 3.2e-21 106.7 61 72.1
MELO3C035641.2 Cucumis melo HOM05D008272 ORTHO05D010429 1.3e-19 101.3 54 88.9
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 2.5e-18 97.1 162 37.7
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 9.5e-18 95.1 233 31.8
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 2.1e-17 94.0 212 32.1
MD03G1201900 Malus domestica HOM05D008272 ORTHO05D010429 2.8e-17 93.6 60 68.3
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 6.2e-17 92.4 223 31.8
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 8.1e-17 92.0 235 29.4
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 1.1e-16 91.7 162 37.7
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 1.8e-16 90.9 215 30.2
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 1.2e-15 88.2 145 36.6
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 1.2e-15 88.2 221 31.7
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 1.2e-15 88.2 196 30.6
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 1.2e-15 88.2 162 34.6
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.5e-15 87.8 219 29.7
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.5e-15 87.8 192 33.9
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 1.5e-15 87.8 225 30.2
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 1.5e-15 87.8 221 32.6
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 2.0e-15 87.4 216 31.0
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 2.0e-15 87.4 145 37.2
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 2.0e-15 87.4 198 32.3
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 2.0e-15 87.4 157 34.4
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 2.6e-15 87.0 163 34.4
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 2.6e-15 87.0 223 31.8
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 2.6e-15 87.0 223 31.8
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 3.4e-15 86.7 134 36.6
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 3.4e-15 86.7 134 36.6
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 3.4e-15 86.7 145 36.6
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 3.4e-15 86.7 131 38.2
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 3.4e-15 86.7 221 30.8
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 4.4e-15 86.3 139 38.1
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 4.4e-15 86.3 195 30.3
arahy.Tifrunner.gnm1.ann1.39PYJI Arachis hypogaea HOM05D008272 ORTHO05D010429 5.8e-15 85.9 109 45.0
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 5.8e-15 85.9 145 35.9
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 5.8e-15 85.9 225 30.7
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 5.8e-15 85.9 145 35.2
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 5.8e-15 85.9 185 32.4
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 5.8e-15 85.9 191 32.5
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 7.6e-15 85.5 199 32.2
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 7.6e-15 85.5 215 31.2
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 7.6e-15 85.5 144 36.1
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 9.9e-15 85.1 191 30.9
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 9.9e-15 85.1 215 30.7
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 9.9e-15 85.1 262 28.6
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.3e-14 84.7 193 32.1
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 1.3e-14 84.7 214 29.9
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 1.3e-14 84.7 157 33.8
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 1.7e-14 84.3 184 32.1
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 1.7e-14 84.3 138 35.5
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 1.7e-14 84.3 138 35.5
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 1.7e-14 84.3 193 32.1
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.7e-14 84.3 160 34.4
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 1.7e-14 84.3 213 29.6
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.7e-14 84.3 152 34.2
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 2.2e-14 84.0 160 34.4
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 2.9e-14 83.6 199 32.2
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 2.9e-14 83.6 199 32.2
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 2.9e-14 83.6 199 32.2
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 3.8e-14 83.2 195 33.3
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 3.8e-14 83.2 195 33.3
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 3.8e-14 83.2 198 31.3
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 3.8e-14 83.2 223 30.5
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 3.8e-14 83.2 147 32.7
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 3.8e-14 83.2 147 36.7
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 4.9e-14 82.8 198 31.3
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 4.9e-14 82.8 145 34.5
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 4.9e-14 82.8 215 28.8
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 4.9e-14 82.8 224 29.9
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 4.9e-14 82.8 160 33.8
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 4.9e-14 82.8 220 28.6
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 6.4e-14 82.4 120 37.5
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 6.4e-14 82.4 140 33.6
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 6.4e-14 82.4 194 32.5
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 8.4e-14 82.0 205 30.2
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 8.4e-14 82.0 278 27.3
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 8.4e-14 82.0 215 30.7
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 1.1e-13 81.6 242 28.9
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 1.4e-13 81.3 191 29.8
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.4e-13 81.3 191 29.8
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 1.4e-13 81.3 162 34.0
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 1.4e-13 81.3 147 33.3
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 1.4e-13 81.3 210 29.5
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 1.9e-13 80.9 206 29.1
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 1.9e-13 80.9 194 30.4
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 2.4e-13 80.5 230 30.9
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 2.4e-13 80.5 191 29.8
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.4e-13 80.5 191 29.8
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 2.4e-13 80.5 142 31.7
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 2.4e-13 80.5 126 34.1
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 3.2e-13 80.1 213 29.6
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 3.2e-13 80.1 183 26.8
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 4.2e-13 79.7 196 30.6
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.2e-13 79.7 142 32.4
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 5.4e-13 79.3 183 30.1
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 5.4e-13 79.3 142 31.7
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 5.4e-13 79.3 116 37.1
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 5.4e-13 79.3 219 30.1
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 5.4e-13 79.3 148 32.4
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.4e-13 79.3 183 30.6
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 7.1e-13 79.0 191 29.3
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 7.1e-13 79.0 195 30.3
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 7.1e-13 79.0 116 36.2
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 7.1e-13 79.0 116 36.2
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 7.1e-13 79.0 138 32.6
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 9.2e-13 78.6 184 31.5
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 1.2e-12 78.2 195 29.2
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 1.2e-12 78.2 215 29.8
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 1.6e-12 77.8 193 28.5
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 1.6e-12 77.8 190 30.5
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 2.1e-12 77.4 195 29.2
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 2.1e-12 77.4 116 36.2
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 3.5e-12 76.6 184 30.4
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 6.0e-12 75.9 163 32.5
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.3e-11 74.7 116 37.1
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 2.3e-11 73.9 116 36.2
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 3.0e-11 73.6 216 27.8
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 5.1e-11 72.8 217 26.7
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 4.3e-10 69.7 214 28.0
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 5.6e-10 69.3 142 31.7
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 5.6e-10 69.3 252 25.8
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 9.9e-07 58.5 96 36.5
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 9.9e-07 58.5 121 31.4
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 3.8e-06 56.6 62 46.8
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 4.9e-06 56.2 211 26.1
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 8.4e-06 55.5 74 37.8


User provided reference genes

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